miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5617 3' -60.5 NC_001806.1 + 151009 0.67 0.6393
Target:  5'- cGGGCGGC-CGaGGCCCA-GACCaCCAg- -3'
miRNA:   3'- -CUCGUUGcGC-CCGGGUgCUGG-GGUau -5'
5617 3' -60.5 NC_001806.1 + 150976 0.72 0.346649
Target:  5'- -cGCu-CGCGGGCCCACGAgCCgCGg- -3'
miRNA:   3'- cuCGuuGCGCCCGGGUGCUgGG-GUau -5'
5617 3' -60.5 NC_001806.1 + 150892 0.67 0.619215
Target:  5'- cGGGCAcggGCcuCGGGCCCcaggcACGGCCCgAUGa -3'
miRNA:   3'- -CUCGU---UGc-GCCCGGG-----UGCUGGGgUAU- -5'
5617 3' -60.5 NC_001806.1 + 150076 0.67 0.646328
Target:  5'- uGGCcGCGCGucccaggggaggcaGGCCCaccgcgggGCGGCCCCGUc -3'
miRNA:   3'- cUCGuUGCGC--------------CCGGG--------UGCUGGGGUAu -5'
5617 3' -60.5 NC_001806.1 + 147750 0.68 0.539791
Target:  5'- gGGGC-GCGCGGGUCCcgacGCGGCCgCGg- -3'
miRNA:   3'- -CUCGuUGCGCCCGGG----UGCUGGgGUau -5'
5617 3' -60.5 NC_001806.1 + 147714 0.66 0.669367
Target:  5'- aGGCGGCGCucgcacgcacGGGgCCACGGCCgCGc- -3'
miRNA:   3'- cUCGUUGCG----------CCCgGGUGCUGGgGUau -5'
5617 3' -60.5 NC_001806.1 + 147509 0.66 0.678346
Target:  5'- gGGGCGGCGCcgcgggaGGGCCC--GugCCCAc- -3'
miRNA:   3'- -CUCGUUGCG-------CCCGGGugCugGGGUau -5'
5617 3' -60.5 NC_001806.1 + 147026 0.66 0.709008
Target:  5'- aGGUAGCGCGugaggccGCCCGCGgggacgGCCCCGg- -3'
miRNA:   3'- cUCGUUGCGCc------CGGGUGC------UGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 146188 0.68 0.559405
Target:  5'- aGGCAGCcCGGG-CCGCGGCUCUGUGg -3'
miRNA:   3'- cUCGUUGcGCCCgGGUGCUGGGGUAU- -5'
5617 3' -60.5 NC_001806.1 + 145728 0.69 0.520414
Target:  5'- uGGCcGCGCGGGUgCGCGugCCUu-- -3'
miRNA:   3'- cUCGuUGCGCCCGgGUGCugGGGuau -5'
5617 3' -60.5 NC_001806.1 + 144967 0.68 0.579214
Target:  5'- uGGCGGC-CcGGCCCGgGGCCCCGg- -3'
miRNA:   3'- cUCGUUGcGcCCGGGUgCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 143427 0.67 0.599168
Target:  5'- cGAGCGGC-CcGGCCCGCGcUCCCAc- -3'
miRNA:   3'- -CUCGUUGcGcCCGGGUGCuGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 140682 0.7 0.446033
Target:  5'- -uGCuGCGCGGcGCCCGCGugCCgCGc- -3'
miRNA:   3'- cuCGuUGCGCC-CGGGUGCugGG-GUau -5'
5617 3' -60.5 NC_001806.1 + 138671 0.7 0.473269
Target:  5'- -uGCAGCGCccGGGCCUggauGCGACCCa--- -3'
miRNA:   3'- cuCGUUGCG--CCCGGG----UGCUGGGguau -5'
5617 3' -60.5 NC_001806.1 + 134463 0.7 0.43715
Target:  5'- uGGgGACGUGcGGCgacCCGCGACCCCGa- -3'
miRNA:   3'- cUCgUUGCGC-CCG---GGUGCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 132651 0.69 0.53007
Target:  5'- -uGguGCGCGGGgCCGCGGCCgCu-- -3'
miRNA:   3'- cuCguUGCGCCCgGGUGCUGGgGuau -5'
5617 3' -60.5 NC_001806.1 + 132485 0.66 0.689279
Target:  5'- uGGCAuaccacgguccACGCcgcccccgGGGCCCugGcCCCCGUc -3'
miRNA:   3'- cUCGU-----------UGCG--------CCCGGGugCuGGGGUAu -5'
5617 3' -60.5 NC_001806.1 + 132350 0.68 0.579214
Target:  5'- -uGCGAgGUGGGCCUGCGGCCaCGc- -3'
miRNA:   3'- cuCGUUgCGCCCGGGUGCUGGgGUau -5'
5617 3' -60.5 NC_001806.1 + 132065 0.67 0.599168
Target:  5'- aGAGCGuCGUgGGGCCCGCccgccGCCCCu-- -3'
miRNA:   3'- -CUCGUuGCG-CCCGGGUGc----UGGGGuau -5'
5617 3' -60.5 NC_001806.1 + 131607 0.66 0.699171
Target:  5'- cGGCAGCaUGGGaCCCACaGACcgCCCGUGa -3'
miRNA:   3'- cUCGUUGcGCCC-GGGUG-CUG--GGGUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.