miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5621 5' -56.3 NC_001806.1 + 143407 0.66 0.886808
Target:  5'- cGGCCgggucgCGGcucuuaCGAGCGGCCCgGCc -3'
miRNA:   3'- -CCGGa-----GCUuaug--GCUCGCUGGGaCGu -5'
5621 5' -56.3 NC_001806.1 + 135757 0.66 0.912283
Target:  5'- cGGCCgugCGGAagGCCuGGCGAagCUGCGg -3'
miRNA:   3'- -CCGGa--GCUUa-UGGcUCGCUggGACGU- -5'
5621 5' -56.3 NC_001806.1 + 135026 0.66 0.906259
Target:  5'- cGCCUCGcgcAGUucuuCCGGGCGACC--GCGa -3'
miRNA:   3'- cCGGAGC---UUAu---GGCUCGCUGGgaCGU- -5'
5621 5' -56.3 NC_001806.1 + 131973 0.69 0.772132
Target:  5'- cGGCCcUGGAgcgccagACCGGGCcgguGGCCCUGUu -3'
miRNA:   3'- -CCGGaGCUUa------UGGCUCG----CUGGGACGu -5'
5621 5' -56.3 NC_001806.1 + 129670 0.7 0.724151
Target:  5'- cGCC-CGGGccGCCGAGCGGCCCg--- -3'
miRNA:   3'- cCGGaGCUUa-UGGCUCGCUGGGacgu -5'
5621 5' -56.3 NC_001806.1 + 127770 0.66 0.893519
Target:  5'- gGGCCUgUGGcgGCCGucucGCGAUCCgcGCAu -3'
miRNA:   3'- -CCGGA-GCUuaUGGCu---CGCUGGGa-CGU- -5'
5621 5' -56.3 NC_001806.1 + 127046 0.73 0.542827
Target:  5'- gGGCCUCucGUucuCCGGGgccCGGCCCUGCu -3'
miRNA:   3'- -CCGGAGcuUAu--GGCUC---GCUGGGACGu -5'
5621 5' -56.3 NC_001806.1 + 126887 0.66 0.906259
Target:  5'- gGGCuCUCGGG-GCCGcAG-GACCCaGCAa -3'
miRNA:   3'- -CCG-GAGCUUaUGGC-UCgCUGGGaCGU- -5'
5621 5' -56.3 NC_001806.1 + 125856 0.67 0.857784
Target:  5'- cGGCCgccgCGGAcGCCGuGGCGcCCCgGCc -3'
miRNA:   3'- -CCGGa---GCUUaUGGC-UCGCuGGGaCGu -5'
5621 5' -56.3 NC_001806.1 + 124324 0.67 0.857016
Target:  5'- uGGaCCUCGGuaaguAUAUCGgccaacuGGCGuCCCUGCGc -3'
miRNA:   3'- -CC-GGAGCU-----UAUGGC-------UCGCuGGGACGU- -5'
5621 5' -56.3 NC_001806.1 + 123264 0.67 0.859315
Target:  5'- uGGCCgagacgcaccucCGA--GCCGAGauuuacaaggaccaGACCCUGCAg -3'
miRNA:   3'- -CCGGa-----------GCUuaUGGCUCg-------------CUGGGACGU- -5'
5621 5' -56.3 NC_001806.1 + 123225 0.68 0.790522
Target:  5'- uGGaCCga-GAUGCCGcccacGCGGCCCUGCGc -3'
miRNA:   3'- -CC-GGagcUUAUGGCu----CGCUGGGACGU- -5'
5621 5' -56.3 NC_001806.1 + 115412 0.67 0.857784
Target:  5'- gGGCCUCGccGGUGCUcAGC--CCCUGCu -3'
miRNA:   3'- -CCGGAGC--UUAUGGcUCGcuGGGACGu -5'
5621 5' -56.3 NC_001806.1 + 112250 0.74 0.456738
Target:  5'- uGGCCaccaGggUGgcCCGGGCGACCCUGg- -3'
miRNA:   3'- -CCGGag--CuuAU--GGCUCGCUGGGACgu -5'
5621 5' -56.3 NC_001806.1 + 111526 0.67 0.857784
Target:  5'- gGGCCgUCGGgcacGUACaCGGGUGGCCggGCGu -3'
miRNA:   3'- -CCGG-AGCU----UAUG-GCUCGCUGGgaCGU- -5'
5621 5' -56.3 NC_001806.1 + 110272 0.71 0.643769
Target:  5'- aGGUCUCGAAUAcaacgacggcuuCCGuAGUaugGACCCUGCc -3'
miRNA:   3'- -CCGGAGCUUAU------------GGC-UCG---CUGGGACGu -5'
5621 5' -56.3 NC_001806.1 + 105349 0.66 0.893519
Target:  5'- cGCCcgcCGGcUGCCGGGaCG-CCCUGCu -3'
miRNA:   3'- cCGGa--GCUuAUGGCUC-GCuGGGACGu -5'
5621 5' -56.3 NC_001806.1 + 104238 1.11 0.002217
Target:  5'- uGGCCUCGAAUACCGAGCGACCCUGCAg -3'
miRNA:   3'- -CCGGAGCUUAUGGCUCGCUGGGACGU- -5'
5621 5' -56.3 NC_001806.1 + 101964 0.67 0.84204
Target:  5'- gGGUcagCUCGAccGCCGGGuCGGCCCgGUAc -3'
miRNA:   3'- -CCG---GAGCUuaUGGCUC-GCUGGGaCGU- -5'
5621 5' -56.3 NC_001806.1 + 100774 0.69 0.781393
Target:  5'- cGGCCUCGGcgGCCagucgccGCGcCCCUcGCGa -3'
miRNA:   3'- -CCGGAGCUuaUGGcu-----CGCuGGGA-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.