miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5626 3' -54.8 NC_001806.1 + 31367 0.66 0.938804
Target:  5'- -uGUGGGGAGGgGGGGGuCGGGcGCUGg -3'
miRNA:   3'- ccCGCCUUUCCgCUCUC-GCUUaCGAU- -5'
5626 3' -54.8 NC_001806.1 + 136998 0.66 0.938804
Target:  5'- cGGCGGcc-GGCGGGgAGCGccaGCUAg -3'
miRNA:   3'- cCCGCCuuuCCGCUC-UCGCuuaCGAU- -5'
5626 3' -54.8 NC_001806.1 + 76552 0.66 0.938804
Target:  5'- cGGCGGGGcuGCGGGAG---GUGCUGg -3'
miRNA:   3'- cCCGCCUUucCGCUCUCgcuUACGAU- -5'
5626 3' -54.8 NC_001806.1 + 43979 0.66 0.937832
Target:  5'- uGGGaUGGAGGGGCGGGuGUGAuagacccacagGCa- -3'
miRNA:   3'- -CCC-GCCUUUCCGCUCuCGCUua---------CGau -5'
5626 3' -54.8 NC_001806.1 + 25637 0.66 0.933845
Target:  5'- gGGGCugGGGAGGGCuggggcuggggaGGGGGCGGugGUGUg- -3'
miRNA:   3'- -CCCG--CCUUUCCG------------CUCUCGCU--UACGau -5'
5626 3' -54.8 NC_001806.1 + 129736 0.66 0.933845
Target:  5'- gGGaGUGGAAGcgcgccuuGGCGGGGGCGAuaacaucUGCa- -3'
miRNA:   3'- -CC-CGCCUUU--------CCGCUCUCGCUu------ACGau -5'
5626 3' -54.8 NC_001806.1 + 83259 0.66 0.933845
Target:  5'- cGGGgGGgcGGGCGAcggaggggguucGGGCGGGcGCg- -3'
miRNA:   3'- -CCCgCCuuUCCGCU------------CUCGCUUaCGau -5'
5626 3' -54.8 NC_001806.1 + 95384 0.66 0.92864
Target:  5'- gGGGuUGGGAgcucccggGGGCGGGGGCGAGg---- -3'
miRNA:   3'- -CCC-GCCUU--------UCCGCUCUCGCUUacgau -5'
5626 3' -54.8 NC_001806.1 + 148180 0.66 0.92864
Target:  5'- -cGUGGggGGGCGcGGGGCGuccgGCg- -3'
miRNA:   3'- ccCGCCuuUCCGC-UCUCGCuua-CGau -5'
5626 3' -54.8 NC_001806.1 + 74962 0.66 0.92864
Target:  5'- cGGGCGGAcauGUGGGGGC---UGCUGg -3'
miRNA:   3'- -CCCGCCUuucCGCUCUCGcuuACGAU- -5'
5626 3' -54.8 NC_001806.1 + 27246 0.66 0.923187
Target:  5'- aGGGCGGGccgccucgGGGGCGGGAcuggccaaucgGCGGccGCc- -3'
miRNA:   3'- -CCCGCCU--------UUCCGCUCU-----------CGCUuaCGau -5'
5626 3' -54.8 NC_001806.1 + 101778 0.66 0.921504
Target:  5'- uGGGCGuGGAuaaccuccccacagGGGUGGGGuuuguGCGggUGCg- -3'
miRNA:   3'- -CCCGC-CUU--------------UCCGCUCU-----CGCuuACGau -5'
5626 3' -54.8 NC_001806.1 + 55077 0.66 0.917488
Target:  5'- gGGGCuGGAGGGUcagagacgGGGGGCGGAacaUGCg- -3'
miRNA:   3'- -CCCGcCUUUCCG--------CUCUCGCUU---ACGau -5'
5626 3' -54.8 NC_001806.1 + 147782 0.66 0.917488
Target:  5'- cGGGgGGcccGGGGCgGGGGGCGGAgccugGCa- -3'
miRNA:   3'- -CCCgCCu--UUCCG-CUCUCGCUUa----CGau -5'
5626 3' -54.8 NC_001806.1 + 135106 0.66 0.911542
Target:  5'- gGGGa-GggGGGCGGGGGCagcgcugcGUGCUGg -3'
miRNA:   3'- -CCCgcCuuUCCGCUCUCGcu------UACGAU- -5'
5626 3' -54.8 NC_001806.1 + 91004 0.66 0.911542
Target:  5'- gGGGCGGGc--GCGAcGGCGGcgGCa- -3'
miRNA:   3'- -CCCGCCUuucCGCUcUCGCUuaCGau -5'
5626 3' -54.8 NC_001806.1 + 151560 0.66 0.911542
Target:  5'- gGGGCGGcGGGGGCcgcGAuGGCGGcgGCg- -3'
miRNA:   3'- -CCCGCC-UUUCCG---CUcUCGCUuaCGau -5'
5626 3' -54.8 NC_001806.1 + 34061 0.66 0.911542
Target:  5'- uGGGUGGGAgaAGGCGAGGagacugggguGgGggUGUc- -3'
miRNA:   3'- -CCCGCCUU--UCCGCUCU----------CgCuuACGau -5'
5626 3' -54.8 NC_001806.1 + 33816 0.66 0.910934
Target:  5'- cGGGUGGAcucgcggGGGGCcgGAGGGUGGAagGCa- -3'
miRNA:   3'- -CCCGCCU-------UUCCG--CUCUCGCUUa-CGau -5'
5626 3' -54.8 NC_001806.1 + 25006 0.67 0.905352
Target:  5'- cGGGcCGGGAcgGGGCGGG-GCGcuUGUg- -3'
miRNA:   3'- -CCC-GCCUU--UCCGCUCuCGCuuACGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.