miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5627 3' -44 NC_001806.1 + 82415 0.66 1
Target:  5'- uGGAGGGAGAguAGGGGccCGC---CUCCCc -3'
miRNA:   3'- -UCUUUCUUU--UCCCUu-GUGuuuGAGGG- -5'
5627 3' -44 NC_001806.1 + 143814 0.66 1
Target:  5'- aGGGAGGggGugacGGGGGACGgGAACa--- -3'
miRNA:   3'- -UCUUUCuuU----UCCCUUGUgUUUGaggg -5'
5627 3' -44 NC_001806.1 + 147266 0.66 1
Target:  5'- gAGGAGGAAGAGGcGGAgGCcgccgaGGACgucaggggggUCCCg -3'
miRNA:   3'- -UCUUUCUUUUCC-CUUgUG------UUUG----------AGGG- -5'
5627 3' -44 NC_001806.1 + 133348 0.66 1
Target:  5'- cAGgcGGGAGuGuGGuuCugGAACUCCCg -3'
miRNA:   3'- -UCuuUCUUUuC-CCuuGugUUUGAGGG- -5'
5627 3' -44 NC_001806.1 + 6277 0.66 1
Target:  5'- ----cGGAAAGGGAcACGCGGACgcgggggggaaagaCCCg -3'
miRNA:   3'- ucuuuCUUUUCCCU-UGUGUUUGa-------------GGG- -5'
5627 3' -44 NC_001806.1 + 21225 0.66 1
Target:  5'- cGGAGGAGGGcGGGGACG---AC-CCCg -3'
miRNA:   3'- uCUUUCUUUU-CCCUUGUguuUGaGGG- -5'
5627 3' -44 NC_001806.1 + 13419 0.66 1
Target:  5'- uGAccGugauGGGGAuaGCACAGuugcCUCCCa -3'
miRNA:   3'- uCUuuCuuu-UCCCU--UGUGUUu---GAGGG- -5'
5627 3' -44 NC_001806.1 + 4418 0.66 1
Target:  5'- cGGAGAGggGGGGuggcccGGGCGgGGGCggcguccgCCCg -3'
miRNA:   3'- -UCUUUCuuUUCC------CUUGUgUUUGa-------GGG- -5'
5627 3' -44 NC_001806.1 + 77945 0.66 0.999999
Target:  5'- uGGAAuGggGGGGuGACGCGgcGGC-CCCg -3'
miRNA:   3'- -UCUUuCuuUUCCcUUGUGU--UUGaGGG- -5'
5627 3' -44 NC_001806.1 + 66313 0.66 0.999999
Target:  5'- cAGAAuGAcAAcGGGGACGCuGACcgCCCc -3'
miRNA:   3'- -UCUUuCUuUU-CCCUUGUGuUUGa-GGG- -5'
5627 3' -44 NC_001806.1 + 55384 0.66 0.999999
Target:  5'- cGGAgcGAuuGGGGGGgACGGAC-CCa -3'
miRNA:   3'- -UCUuuCUuuUCCCUUgUGUUUGaGGg -5'
5627 3' -44 NC_001806.1 + 45517 0.66 0.999999
Target:  5'- uGAGGGguGGGGGuGgAgGGugUCCCa -3'
miRNA:   3'- uCUUUCuuUUCCCuUgUgUUugAGGG- -5'
5627 3' -44 NC_001806.1 + 23280 0.67 0.999999
Target:  5'- ----cGGGAGGGGcgcaAGCGCAAGagUCCCg -3'
miRNA:   3'- ucuuuCUUUUCCC----UUGUGUUUg-AGGG- -5'
5627 3' -44 NC_001806.1 + 33647 0.67 0.999999
Target:  5'- cGGgcGGggGGGGGGuguCGCGGGCcgucugcuggCCCg -3'
miRNA:   3'- -UCuuUCuuUUCCCUu--GUGUUUGa---------GGG- -5'
5627 3' -44 NC_001806.1 + 45337 0.67 0.999999
Target:  5'- cGAuGGGAucGGGGGCGCGcgguGCgagaCCCa -3'
miRNA:   3'- uCUuUCUUuuCCCUUGUGUu---UGa---GGG- -5'
5627 3' -44 NC_001806.1 + 83812 0.66 0.999999
Target:  5'- gAGGAGGggGcGGGGucgGCGCGGGaUCCg -3'
miRNA:   3'- -UCUUUCuuUuCCCU---UGUGUUUgAGGg -5'
5627 3' -44 NC_001806.1 + 90336 0.66 0.999999
Target:  5'- cGAcGGGGcucGGGGGuacCGCGGugUCCCu -3'
miRNA:   3'- uCUuUCUU---UUCCCuu-GUGUUugAGGG- -5'
5627 3' -44 NC_001806.1 + 71932 0.67 0.999999
Target:  5'- gAGggGGgcGAGuGGAcgcGCGCGAccGCgggCCCu -3'
miRNA:   3'- -UCuuUCuuUUC-CCU---UGUGUU--UGa--GGG- -5'
5627 3' -44 NC_001806.1 + 76062 0.66 0.999999
Target:  5'- cGGcuGGcgGGGGGGcuGCugGAGCgggCCCa -3'
miRNA:   3'- -UCuuUCuuUUCCCU--UGugUUUGa--GGG- -5'
5627 3' -44 NC_001806.1 + 29655 0.66 0.999999
Target:  5'- aGGggGGggGAGGGAGgaAUAGGCg--- -3'
miRNA:   3'- -UCuuUCuuUUCCCUUg-UGUUUGaggg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.