miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5628 3' -58.3 NC_001806.1 + 122188 0.66 0.825895
Target:  5'- -cGAACCgaACCAGCCCcgcaGGcAgGCGUCg -3'
miRNA:   3'- uuCUUGGggUGGUUGGG----CC-UgCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 90553 0.66 0.825895
Target:  5'- uGAGcGCCUCgGCCugGACCCGGAcCGCGcCc -3'
miRNA:   3'- -UUCuUGGGG-UGG--UUGGGCCU-GCGCaG- -5'
5628 3' -58.3 NC_001806.1 + 9537 0.66 0.825895
Target:  5'- gGGGGGCCagCCACgGgACCUGGuCGCGUUc -3'
miRNA:   3'- -UUCUUGG--GGUGgU-UGGGCCuGCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 4738 0.66 0.825895
Target:  5'- --cGGCCCCggGCCGggGCCCGGucgccgGCGgCGUCg -3'
miRNA:   3'- uucUUGGGG--UGGU--UGGGCC------UGC-GCAG- -5'
5628 3' -58.3 NC_001806.1 + 126406 0.66 0.825056
Target:  5'- cGAGGACUUgauggcaCACCGGucCCCGGAgGCGUUc -3'
miRNA:   3'- -UUCUUGGG-------GUGGUU--GGGCCUgCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 147324 0.66 0.825056
Target:  5'- -cGcGCCCCcCCGGCCCugagucggaggggGGGUGCGUCg -3'
miRNA:   3'- uuCuUGGGGuGGUUGGG-------------CCUGCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 28159 0.66 0.825056
Target:  5'- uGAGGGCCgCCcCCAGCgcgaggugaggggCCGGGCGCcauGUCu -3'
miRNA:   3'- -UUCUUGG-GGuGGUUG-------------GGCCUGCG---CAG- -5'
5628 3' -58.3 NC_001806.1 + 75158 0.66 0.817425
Target:  5'- -cGAACgCCAUCAACgCCGGcaGCGCcgccGUCg -3'
miRNA:   3'- uuCUUGgGGUGGUUG-GGCC--UGCG----CAG- -5'
5628 3' -58.3 NC_001806.1 + 85577 0.66 0.817425
Target:  5'- aGAGAAaCCCACgGACgCGGAgauuccgacCGUGUCg -3'
miRNA:   3'- -UUCUUgGGGUGgUUGgGCCU---------GCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 52888 0.66 0.817425
Target:  5'- -cGAcguGCCCCuCCucgUCCGGcGCGCGUCu -3'
miRNA:   3'- uuCU---UGGGGuGGuu-GGGCC-UGCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 89462 0.66 0.817425
Target:  5'- -cGGACCCCcagGCUcGCCCGGGC-CGg- -3'
miRNA:   3'- uuCUUGGGG---UGGuUGGGCCUGcGCag -5'
5628 3' -58.3 NC_001806.1 + 150109 0.66 0.817425
Target:  5'- cGGGGcgGCCCCguccccggggACCAACCCGG-CGCc-- -3'
miRNA:   3'- -UUCU--UGGGG----------UGGUUGGGCCuGCGcag -5'
5628 3' -58.3 NC_001806.1 + 58644 0.66 0.817425
Target:  5'- --cGGCCUCGCCG--UCGGACGuCGUCg -3'
miRNA:   3'- uucUUGGGGUGGUugGGCCUGC-GCAG- -5'
5628 3' -58.3 NC_001806.1 + 143441 0.66 0.817425
Target:  5'- -cGcGCuCCCACCc-CCCGGGcCGUGUCc -3'
miRNA:   3'- uuCuUG-GGGUGGuuGGGCCU-GCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 144844 0.66 0.816568
Target:  5'- -cGGGCCCCGuCCgGACCCGcucgccggcacgcGACGCGa- -3'
miRNA:   3'- uuCUUGGGGU-GG-UUGGGC-------------CUGCGCag -5'
5628 3' -58.3 NC_001806.1 + 6072 0.66 0.808789
Target:  5'- --cGGCCCCggggGCgGGCCCGGGCgGCGg- -3'
miRNA:   3'- uucUUGGGG----UGgUUGGGCCUG-CGCag -5'
5628 3' -58.3 NC_001806.1 + 24801 0.66 0.808789
Target:  5'- cGGGGGCCCUGCCGccggcgccGCCCGGGauuCGCu-- -3'
miRNA:   3'- -UUCUUGGGGUGGU--------UGGGCCU---GCGcag -5'
5628 3' -58.3 NC_001806.1 + 46182 0.66 0.808789
Target:  5'- -cGGGCCCC-CCgAACCCagcgGGugGCGa- -3'
miRNA:   3'- uuCUUGGGGuGG-UUGGG----CCugCGCag -5'
5628 3' -58.3 NC_001806.1 + 69820 0.66 0.808789
Target:  5'- ----cCCCCACCAcCCCGGccACGCcgcuGUCc -3'
miRNA:   3'- uucuuGGGGUGGUuGGGCC--UGCG----CAG- -5'
5628 3' -58.3 NC_001806.1 + 115221 0.66 0.808789
Target:  5'- -----gCCCugCAACCCccggGGACGCGcCg -3'
miRNA:   3'- uucuugGGGugGUUGGG----CCUGCGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.