miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5630 5' -58 NC_001806.1 + 23613 0.66 0.84778
Target:  5'- uACuGCUCCCc-GcgCGCCGUGGCCg- -3'
miRNA:   3'- -UGcUGGGGGuuCaaGUGGCACCGGac -5'
5630 5' -58 NC_001806.1 + 100081 0.66 0.84778
Target:  5'- cCGACCCCCGgaccccagGGUcUC-CCGcGGCCg- -3'
miRNA:   3'- uGCUGGGGGU--------UCA-AGuGGCaCCGGac -5'
5630 5' -58 NC_001806.1 + 67505 0.66 0.84778
Target:  5'- cCGACCCCCuGGggaGCCcugGGCCg- -3'
miRNA:   3'- uGCUGGGGGuUCaagUGGca-CCGGac -5'
5630 5' -58 NC_001806.1 + 79733 0.66 0.84778
Target:  5'- cGCGACCaCCCAgGGUUgGCgGccGCCUGc -3'
miRNA:   3'- -UGCUGG-GGGU-UCAAgUGgCacCGGAC- -5'
5630 5' -58 NC_001806.1 + 71418 0.66 0.839813
Target:  5'- gAUGAUCCCgGAGgaCACCGUcGcGCCa- -3'
miRNA:   3'- -UGCUGGGGgUUCaaGUGGCA-C-CGGac -5'
5630 5' -58 NC_001806.1 + 74468 0.66 0.839813
Target:  5'- aACGACCaaCAGGcgCGCCGcagcucgGGUCUGg -3'
miRNA:   3'- -UGCUGGggGUUCaaGUGGCa------CCGGAC- -5'
5630 5' -58 NC_001806.1 + 78925 0.66 0.839813
Target:  5'- aGCGGCCCCUcgcccGGGgccCGCCGUG-UCUGg -3'
miRNA:   3'- -UGCUGGGGG-----UUCaa-GUGGCACcGGAC- -5'
5630 5' -58 NC_001806.1 + 56239 0.66 0.839813
Target:  5'- -aGGCCCCgAAGcgUCGCCGccaaccgGGCCc- -3'
miRNA:   3'- ugCUGGGGgUUCa-AGUGGCa------CCGGac -5'
5630 5' -58 NC_001806.1 + 5589 0.66 0.831662
Target:  5'- cCGGCaCgCCGGGggC-CCGUGGCCg- -3'
miRNA:   3'- uGCUG-GgGGUUCaaGuGGCACCGGac -5'
5630 5' -58 NC_001806.1 + 56489 0.66 0.831662
Target:  5'- cAUGGCCUCCGAGaaaCACCuggGGCCa- -3'
miRNA:   3'- -UGCUGGGGGUUCaa-GUGGca-CCGGac -5'
5630 5' -58 NC_001806.1 + 29425 0.66 0.831662
Target:  5'- aACGACCCCCAGacccgCAUgGaGGCCg- -3'
miRNA:   3'- -UGCUGGGGGUUcaa--GUGgCaCCGGac -5'
5630 5' -58 NC_001806.1 + 9078 0.66 0.826686
Target:  5'- gACGGCCCCCAggccggaagccccccGGagcCACCGagcGGCCa- -3'
miRNA:   3'- -UGCUGGGGGU---------------UCaa-GUGGCa--CCGGac -5'
5630 5' -58 NC_001806.1 + 150848 0.66 0.823334
Target:  5'- aACGuuagaCCGAGUUCGCCG-GGCCg- -3'
miRNA:   3'- -UGCuggg-GGUUCAAGUGGCaCCGGac -5'
5630 5' -58 NC_001806.1 + 131971 0.66 0.823334
Target:  5'- gGCGGCCCUgGAGcgCcagACCG-GGCCg- -3'
miRNA:   3'- -UGCUGGGGgUUCaaG---UGGCaCCGGac -5'
5630 5' -58 NC_001806.1 + 52289 0.66 0.818256
Target:  5'- cGCGACCCUCAccggguacggcgucuGGgcCACCGacaGCCUGa -3'
miRNA:   3'- -UGCUGGGGGU---------------UCaaGUGGCac-CGGAC- -5'
5630 5' -58 NC_001806.1 + 144138 0.66 0.814837
Target:  5'- cCGGCCCCCcgcGAGUcCACCcgccGGCCg- -3'
miRNA:   3'- uGCUGGGGG---UUCAaGUGGca--CCGGac -5'
5630 5' -58 NC_001806.1 + 3913 0.66 0.814837
Target:  5'- cGCGGCgCCCGAGau--CCGgaagcaGGCCUGg -3'
miRNA:   3'- -UGCUGgGGGUUCaaguGGCa-----CCGGAC- -5'
5630 5' -58 NC_001806.1 + 70860 0.66 0.814837
Target:  5'- cGCGGCCgcgggaCCCGAGc---CCGUGGCCg- -3'
miRNA:   3'- -UGCUGG------GGGUUCaaguGGCACCGGac -5'
5630 5' -58 NC_001806.1 + 102496 0.66 0.806178
Target:  5'- cCGGCCgCCCucGGUcccgaUCACCGcGGCCa- -3'
miRNA:   3'- uGCUGG-GGGu-UCA-----AGUGGCaCCGGac -5'
5630 5' -58 NC_001806.1 + 125849 0.66 0.805303
Target:  5'- -gGGCCCCCGGccgccgcGgaCGCCGUGGCg-- -3'
miRNA:   3'- ugCUGGGGGUU-------CaaGUGGCACCGgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.