miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5636 3' -57.6 NC_001806.1 + 28506 0.66 0.851581
Target:  5'- -gGcCCCUuugacucaGACGCaGGGCCCGggguCGCc -3'
miRNA:   3'- uaCaGGGA--------CUGCGaCCUGGGCau--GCG- -5'
5636 3' -57.6 NC_001806.1 + 2681 0.66 0.84369
Target:  5'- -cG-CCgUGugGCUGGGCCCcggGgGCu -3'
miRNA:   3'- uaCaGGgACugCGACCUGGGca-UgCG- -5'
5636 3' -57.6 NC_001806.1 + 15064 0.66 0.84369
Target:  5'- gGUGUCUUcgGGCGaCUGGuCUCGggGCGCg -3'
miRNA:   3'- -UACAGGGa-CUGC-GACCuGGGCa-UGCG- -5'
5636 3' -57.6 NC_001806.1 + 5394 0.66 0.838864
Target:  5'- cUGUCUCUGGCGgUcccgcgucgggucguGGAUCCGUgucggcagccGCGCu -3'
miRNA:   3'- uACAGGGACUGCgA---------------CCUGGGCA----------UGCG- -5'
5636 3' -57.6 NC_001806.1 + 94785 0.66 0.835609
Target:  5'- cGUGUUggaCCauGCGCUGG-CCCGgACGCg -3'
miRNA:   3'- -UACAG---GGacUGCGACCuGGGCaUGCG- -5'
5636 3' -57.6 NC_001806.1 + 4651 0.66 0.827348
Target:  5'- -cGUCUCcgcGGCgGCUGGGCCgGcggGCGCg -3'
miRNA:   3'- uaCAGGGa--CUG-CGACCUGGgCa--UGCG- -5'
5636 3' -57.6 NC_001806.1 + 119896 0.67 0.822308
Target:  5'- cUGUCCUcGGCGCUGG-CCaCGgcccugaccgaggccUGCGCc -3'
miRNA:   3'- uACAGGGaCUGCGACCuGG-GC---------------AUGCG- -5'
5636 3' -57.6 NC_001806.1 + 80774 0.67 0.818913
Target:  5'- uAUGUCUCUGACGaCgaaGACuCCG-ACGCc -3'
miRNA:   3'- -UACAGGGACUGC-Gac-CUG-GGCaUGCG- -5'
5636 3' -57.6 NC_001806.1 + 103157 0.67 0.818913
Target:  5'- -cGgcagCCgCUGuGCGCUGGGCCUGUAgGa -3'
miRNA:   3'- uaCa---GG-GAC-UGCGACCUGGGCAUgCg -5'
5636 3' -57.6 NC_001806.1 + 22878 0.67 0.810312
Target:  5'- -cGUCCCggGGCugGCcgGGGCCCGgccCGCc -3'
miRNA:   3'- uaCAGGGa-CUG--CGa-CCUGGGCau-GCG- -5'
5636 3' -57.6 NC_001806.1 + 50186 0.67 0.792642
Target:  5'- -gGUCCCUGcUGUacUGG-CCCGgggUGCGCg -3'
miRNA:   3'- uaCAGGGACuGCG--ACCuGGGC---AUGCG- -5'
5636 3' -57.6 NC_001806.1 + 118978 0.67 0.787228
Target:  5'- -cGUCUCccugcccguggugugUGACGCgcagGGcgucuaugACCCGUACGCc -3'
miRNA:   3'- uaCAGGG---------------ACUGCGa---CC--------UGGGCAUGCG- -5'
5636 3' -57.6 NC_001806.1 + 137662 0.68 0.763221
Target:  5'- -gGgcgCCCUGACGCgguUGGcCCCGgccacccacgggGCGCu -3'
miRNA:   3'- uaCa--GGGACUGCG---ACCuGGGCa-----------UGCG- -5'
5636 3' -57.6 NC_001806.1 + 78310 0.68 0.752823
Target:  5'- cUGgcgCCCUGGCGCUcgguccccgagcugGGAaCCGaGCGCg -3'
miRNA:   3'- uACa--GGGACUGCGA--------------CCUgGGCaUGCG- -5'
5636 3' -57.6 NC_001806.1 + 22299 0.68 0.74614
Target:  5'- -gGUCCCcggggacgUGGCGCUGGACCaGgccUGCu -3'
miRNA:   3'- uaCAGGG--------ACUGCGACCUGGgCau-GCG- -5'
5636 3' -57.6 NC_001806.1 + 30194 0.68 0.716993
Target:  5'- -cGUCCgCgGcCGCgucgGGACCCGcGCGCc -3'
miRNA:   3'- uaCAGG-GaCuGCGa---CCUGGGCaUGCG- -5'
5636 3' -57.6 NC_001806.1 + 131937 0.69 0.707124
Target:  5'- -cGaCUCUGugGC-GGGCgCUGUACGCg -3'
miRNA:   3'- uaCaGGGACugCGaCCUG-GGCAUGCG- -5'
5636 3' -57.6 NC_001806.1 + 49356 0.69 0.707124
Target:  5'- -cGUCCCggcaGCGCcccGGGCCCG-AUGCg -3'
miRNA:   3'- uaCAGGGac--UGCGa--CCUGGGCaUGCG- -5'
5636 3' -57.6 NC_001806.1 + 54124 0.69 0.697192
Target:  5'- gGUGUCCC-GGgGCccagGGGCCgGUAgGCg -3'
miRNA:   3'- -UACAGGGaCUgCGa---CCUGGgCAUgCG- -5'
5636 3' -57.6 NC_001806.1 + 42402 0.7 0.646904
Target:  5'- ---cCCCaGACGCUGGGCCUGaa-GCa -3'
miRNA:   3'- uacaGGGaCUGCGACCUGGGCaugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.