Results 1 - 20 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5647 | 5' | -61.4 | NC_001806.1 | + | 75 | 0.66 | 0.69866 |
Target: 5'- uCUGgccGCUCCUC-CCcccGCuccucCCCCCGCu -3' miRNA: 3'- -GACaa-CGAGGAGcGGc--CGu----GGGGGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 21861 | 0.66 | 0.69866 |
Target: 5'- ----aGCcCCgggCGgCGGCgaggACCCCCGCg -3' miRNA: 3'- gacaaCGaGGa--GCgGCCG----UGGGGGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 52756 | 0.66 | 0.69866 |
Target: 5'- ---aUGCgaacgacCCggUCGCCGaGC-CCCCCGCu -3' miRNA: 3'- gacaACGa------GG--AGCGGC-CGuGGGGGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 92926 | 0.66 | 0.69866 |
Target: 5'- -cGggGCgggCCUggagGCCGGgGCCCgCGCg -3' miRNA: 3'- gaCaaCGa--GGAg---CGGCCgUGGGgGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 151785 | 0.66 | 0.69866 |
Target: 5'- uCUGgccGCUCCUC-CCcccGCuccucCCCCCGCu -3' miRNA: 3'- -GACaa-CGAGGAGcGGc--CGu----GGGGGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 23719 | 0.66 | 0.69866 |
Target: 5'- ----cGCggugCGCCGGgccCGCCCCCGCc -3' miRNA: 3'- gacaaCGaggaGCGGCC---GUGGGGGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 55257 | 0.66 | 0.69866 |
Target: 5'- -cGgcGC-CCggGCCGGCcCCCuCCGCc -3' miRNA: 3'- gaCaaCGaGGagCGGCCGuGGG-GGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 48313 | 0.66 | 0.688949 |
Target: 5'- gCUGgcgGCUCCgCGCCuGUccuuucUCCCCGCg -3' miRNA: 3'- -GACaa-CGAGGaGCGGcCGu-----GGGGGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 45264 | 0.66 | 0.688949 |
Target: 5'- uUGUcuUGCUCgUCGCCuuagcGGCgggagacgcggGCCCgCGCg -3' miRNA: 3'- gACA--ACGAGgAGCGG-----CCG-----------UGGGgGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 40372 | 0.66 | 0.688949 |
Target: 5'- ---aUGCgaaccCCUCGaCGGUccCCCCCGCa -3' miRNA: 3'- gacaACGa----GGAGCgGCCGu-GGGGGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 49656 | 0.66 | 0.679194 |
Target: 5'- -cGgaGCUCCg-GgCGGCAUUCCCGUu -3' miRNA: 3'- gaCaaCGAGGagCgGCCGUGGGGGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 89106 | 0.66 | 0.679194 |
Target: 5'- -gGggGCaUCCUCGuCCaGCACCCgCGg -3' miRNA: 3'- gaCaaCG-AGGAGC-GGcCGUGGGgGCg -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 20753 | 0.66 | 0.679194 |
Target: 5'- -cGcUGCUCCUccuuccCGCCGGC-CCCUgGg -3' miRNA: 3'- gaCaACGAGGA------GCGGCCGuGGGGgCg -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 134646 | 0.66 | 0.679194 |
Target: 5'- gCUGUgcacgUGgUCCUCGuuGGCcgucaggaccGCCaCCGCg -3' miRNA: 3'- -GACA-----ACgAGGAGCggCCG----------UGGgGGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 113091 | 0.66 | 0.669403 |
Target: 5'- gUGgcgGCcCCg-GCCGGC-CCCgCCGCa -3' miRNA: 3'- gACaa-CGaGGagCGGCCGuGGG-GGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 72516 | 0.66 | 0.669403 |
Target: 5'- cCUGggggaGC-CCUgCGUCGGCguggGCCCCCGg -3' miRNA: 3'- -GACaa---CGaGGA-GCGGCCG----UGGGGGCg -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 92333 | 0.66 | 0.669403 |
Target: 5'- ---cUGCgcccccagCCUaacgGCCGGCcagacgGCCCCCGCc -3' miRNA: 3'- gacaACGa-------GGAg---CGGCCG------UGGGGGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 126632 | 0.66 | 0.669403 |
Target: 5'- ---gUGCUUCUguUUGGCGCCCCCGa -3' miRNA: 3'- gacaACGAGGAgcGGCCGUGGGGGCg -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 21788 | 0.66 | 0.659584 |
Target: 5'- ----aGCgcggCGCCGGCAgCCCCCGg -3' miRNA: 3'- gacaaCGaggaGCGGCCGU-GGGGGCg -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 4110 | 0.66 | 0.659584 |
Target: 5'- ----cGcCUCCUcCGCCucgGGCGCCCCC-Ca -3' miRNA: 3'- gacaaC-GAGGA-GCGG---CCGUGGGGGcG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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