miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5647 5' -61.4 NC_001806.1 + 55257 0.66 0.69866
Target:  5'- -cGgcGC-CCggGCCGGCcCCCuCCGCc -3'
miRNA:   3'- gaCaaCGaGGagCGGCCGuGGG-GGCG- -5'
5647 5' -61.4 NC_001806.1 + 151785 0.66 0.69866
Target:  5'- uCUGgccGCUCCUC-CCcccGCuccucCCCCCGCu -3'
miRNA:   3'- -GACaa-CGAGGAGcGGc--CGu----GGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 52756 0.66 0.69866
Target:  5'- ---aUGCgaacgacCCggUCGCCGaGC-CCCCCGCu -3'
miRNA:   3'- gacaACGa------GG--AGCGGC-CGuGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 21861 0.66 0.69866
Target:  5'- ----aGCcCCgggCGgCGGCgaggACCCCCGCg -3'
miRNA:   3'- gacaaCGaGGa--GCgGCCG----UGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 75 0.66 0.69866
Target:  5'- uCUGgccGCUCCUC-CCcccGCuccucCCCCCGCu -3'
miRNA:   3'- -GACaa-CGAGGAGcGGc--CGu----GGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 23719 0.66 0.69866
Target:  5'- ----cGCggugCGCCGGgccCGCCCCCGCc -3'
miRNA:   3'- gacaaCGaggaGCGGCC---GUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 92926 0.66 0.69866
Target:  5'- -cGggGCgggCCUggagGCCGGgGCCCgCGCg -3'
miRNA:   3'- gaCaaCGa--GGAg---CGGCCgUGGGgGCG- -5'
5647 5' -61.4 NC_001806.1 + 48313 0.66 0.688949
Target:  5'- gCUGgcgGCUCCgCGCCuGUccuuucUCCCCGCg -3'
miRNA:   3'- -GACaa-CGAGGaGCGGcCGu-----GGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 45264 0.66 0.688949
Target:  5'- uUGUcuUGCUCgUCGCCuuagcGGCgggagacgcggGCCCgCGCg -3'
miRNA:   3'- gACA--ACGAGgAGCGG-----CCG-----------UGGGgGCG- -5'
5647 5' -61.4 NC_001806.1 + 40372 0.66 0.688949
Target:  5'- ---aUGCgaaccCCUCGaCGGUccCCCCCGCa -3'
miRNA:   3'- gacaACGa----GGAGCgGCCGu-GGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 134646 0.66 0.679194
Target:  5'- gCUGUgcacgUGgUCCUCGuuGGCcgucaggaccGCCaCCGCg -3'
miRNA:   3'- -GACA-----ACgAGGAGCggCCG----------UGGgGGCG- -5'
5647 5' -61.4 NC_001806.1 + 20753 0.66 0.679194
Target:  5'- -cGcUGCUCCUccuuccCGCCGGC-CCCUgGg -3'
miRNA:   3'- gaCaACGAGGA------GCGGCCGuGGGGgCg -5'
5647 5' -61.4 NC_001806.1 + 49656 0.66 0.679194
Target:  5'- -cGgaGCUCCg-GgCGGCAUUCCCGUu -3'
miRNA:   3'- gaCaaCGAGGagCgGCCGUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 89106 0.66 0.679194
Target:  5'- -gGggGCaUCCUCGuCCaGCACCCgCGg -3'
miRNA:   3'- gaCaaCG-AGGAGC-GGcCGUGGGgGCg -5'
5647 5' -61.4 NC_001806.1 + 126632 0.66 0.669403
Target:  5'- ---gUGCUUCUguUUGGCGCCCCCGa -3'
miRNA:   3'- gacaACGAGGAgcGGCCGUGGGGGCg -5'
5647 5' -61.4 NC_001806.1 + 113091 0.66 0.669403
Target:  5'- gUGgcgGCcCCg-GCCGGC-CCCgCCGCa -3'
miRNA:   3'- gACaa-CGaGGagCGGCCGuGGG-GGCG- -5'
5647 5' -61.4 NC_001806.1 + 72516 0.66 0.669403
Target:  5'- cCUGggggaGC-CCUgCGUCGGCguggGCCCCCGg -3'
miRNA:   3'- -GACaa---CGaGGA-GCGGCCG----UGGGGGCg -5'
5647 5' -61.4 NC_001806.1 + 92333 0.66 0.669403
Target:  5'- ---cUGCgcccccagCCUaacgGCCGGCcagacgGCCCCCGCc -3'
miRNA:   3'- gacaACGa-------GGAg---CGGCCG------UGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 21788 0.66 0.659584
Target:  5'- ----aGCgcggCGCCGGCAgCCCCCGg -3'
miRNA:   3'- gacaaCGaggaGCGGCCGU-GGGGGCg -5'
5647 5' -61.4 NC_001806.1 + 4110 0.66 0.659584
Target:  5'- ----cGcCUCCUcCGCCucgGGCGCCCCC-Ca -3'
miRNA:   3'- gacaaC-GAGGA-GCGG---CCGUGGGGGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.