Results 41 - 60 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5648 | 3' | -57.5 | NC_001806.1 | + | 117686 | 0.74 | 0.356772 |
Target: 5'- gAGAAGCucggGGCCCGAGCCCgcgUCGgccCCCUCc -3' miRNA: 3'- gUCUUCG----UUGGGUUCGGG---AGC---GGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 138686 | 0.75 | 0.318702 |
Target: 5'- uGGAuGCGACCCAgaGGaCCCUCGCCUa- -3' miRNA: 3'- gUCUuCGUUGGGU--UC-GGGAGCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 60604 | 0.76 | 0.277152 |
Target: 5'- cCGGggGCcACCCcGGCCCcaggUCGUCCUCc -3' miRNA: 3'- -GUCuuCGuUGGGuUCGGG----AGCGGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 20467 | 0.77 | 0.264296 |
Target: 5'- gGGAAGUcggGGCCCGGGCCC-CGCCCc- -3' miRNA: 3'- gUCUUCG---UUGGGUUCGGGaGCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 27069 | 0.78 | 0.20717 |
Target: 5'- -cGAGGCccguGCCCGGGCCCUgGCCCg- -3' miRNA: 3'- guCUUCGu---UGGGUUCGGGAgCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 5771 | 0.7 | 0.588069 |
Target: 5'- aGGggGCGggGCCCGGGCCC-CGaCUUCc -3' miRNA: 3'- gUCuuCGU--UGGGUUCGGGaGCgGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 49124 | 0.7 | 0.608528 |
Target: 5'- aGGAGGCGcgcauccacccGCCCccGCgCCUCGCCCg- -3' miRNA: 3'- gUCUUCGU-----------UGGGuuCG-GGAGCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 115308 | 0.68 | 0.690438 |
Target: 5'- cCAG-AGCGACCCGucccgGGCCUUCGCggCCa- -3' miRNA: 3'- -GUCuUCGUUGGGU-----UCGGGAGCG--GGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 69898 | 0.68 | 0.690438 |
Target: 5'- -cGcGGCGACCCAGauccgcuuCCC-CGCCCUCg -3' miRNA: 3'- guCuUCGUUGGGUUc-------GGGaGCGGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 2312 | 0.68 | 0.690438 |
Target: 5'- -cGAGGCcccgccgccGgCCAGGUCCUCGCCCg- -3' miRNA: 3'- guCUUCGu--------UgGGUUCGGGAGCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 150092 | 0.68 | 0.690438 |
Target: 5'- gGGAGGCAgGCCCAccgcggggcGGCCC-CGUCCcCg -3' miRNA: 3'- gUCUUCGU-UGGGU---------UCGGGaGCGGGaG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 76353 | 0.68 | 0.690438 |
Target: 5'- gCAGggGUcACCCu-GCCCU-GCCCg- -3' miRNA: 3'- -GUCuuCGuUGGGuuCGGGAgCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 88998 | 0.68 | 0.689424 |
Target: 5'- cCAGAAGCcGCCCGA-CCCgacgcggaggacgUCGCgCUCg -3' miRNA: 3'- -GUCUUCGuUGGGUUcGGG-------------AGCGgGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 46673 | 0.69 | 0.680278 |
Target: 5'- --cGAGCGACCuCGAGCCC-CaGCCCg- -3' miRNA: 3'- gucUUCGUUGG-GUUCGGGaG-CGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 116836 | 0.69 | 0.663945 |
Target: 5'- gGGAGGCcGCCCAgcucauucaccccgaAGCCC-CGgCCCUg -3' miRNA: 3'- gUCUUCGuUGGGU---------------UCGGGaGC-GGGAg -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 149935 | 0.69 | 0.65985 |
Target: 5'- aGGggGCGGCCCGAGUCU--GCCUg- -3' miRNA: 3'- gUCuuCGUUGGGUUCGGGagCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 20569 | 0.69 | 0.65985 |
Target: 5'- -cGggGCGcggACCCAcccGCCCUCGCgCCcCg -3' miRNA: 3'- guCuuCGU---UGGGUu--CGGGAGCG-GGaG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 76151 | 0.69 | 0.63933 |
Target: 5'- gGGggGCGugCC-GGCCCUgCGCCa-- -3' miRNA: 3'- gUCuuCGUugGGuUCGGGA-GCGGgag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 22048 | 0.7 | 0.618788 |
Target: 5'- gGGGAGCcguGGCCCGgcgccgGGCCCcCGCCCcCg -3' miRNA: 3'- gUCUUCG---UUGGGU------UCGGGaGCGGGaG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 23803 | 0.7 | 0.608528 |
Target: 5'- cCGGggGCcGCCUcuuuGGCCCccugCGCgCCUCg -3' miRNA: 3'- -GUCuuCGuUGGGu---UCGGGa---GCG-GGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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