miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5649 3' -56.6 NC_001806.1 + 151543 0.67 0.870511
Target:  5'- gUGGGcCCGGGCGGCCGgGggcgGCGg -3'
miRNA:   3'- aGCUU-GGUCUGCCGGCgCaguaCGCg -5'
5649 3' -56.6 NC_001806.1 + 151451 0.75 0.403994
Target:  5'- gCGGcgGCgGGGCGGCCGCGg---GCGCg -3'
miRNA:   3'- aGCU--UGgUCUGCCGGCGCaguaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 151289 0.66 0.884632
Target:  5'- -gGGGCCGGGgGGCgGCGgcgGUGgGCc -3'
miRNA:   3'- agCUUGGUCUgCCGgCGCag-UACgCG- -5'
5649 3' -56.6 NC_001806.1 + 148699 0.66 0.91023
Target:  5'- gUCGAGCgcaGGugGGgCGCGaucUCAUccGUGCa -3'
miRNA:   3'- -AGCUUGg--UCugCCgGCGC---AGUA--CGCG- -5'
5649 3' -56.6 NC_001806.1 + 147733 0.71 0.63236
Target:  5'- -gGGGCC--ACGGCCGCG-CGgggGCGCg -3'
miRNA:   3'- agCUUGGucUGCCGGCGCaGUa--CGCG- -5'
5649 3' -56.6 NC_001806.1 + 145718 0.67 0.84778
Target:  5'- cCGGcCCAccUGGCCGCGcggGUGCGCg -3'
miRNA:   3'- aGCUuGGUcuGCCGGCGCag-UACGCG- -5'
5649 3' -56.6 NC_001806.1 + 145006 0.69 0.77931
Target:  5'- cCGGcCCGGggccccacaACGGCCcgGCG-CAUGCGCu -3'
miRNA:   3'- aGCUuGGUC---------UGCCGG--CGCaGUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 144601 0.67 0.855556
Target:  5'- cCGGGCCccccugcagccgGGGCGGCCaagggGCGUCG-GCGa -3'
miRNA:   3'- aGCUUGG------------UCUGCCGG-----CGCAGUaCGCg -5'
5649 3' -56.6 NC_001806.1 + 138389 0.71 0.652564
Target:  5'- -aGAGCCAGGaccaGGaCGCGgggcaCAUGCGCu -3'
miRNA:   3'- agCUUGGUCUg---CCgGCGCa----GUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 135576 0.75 0.412524
Target:  5'- cUCGGccGCCAGGuCGGCCGCGcgCugcugGCGCu -3'
miRNA:   3'- -AGCU--UGGUCU-GCCGGCGCa-Gua---CGCG- -5'
5649 3' -56.6 NC_001806.1 + 134861 0.66 0.877679
Target:  5'- cUCGcaGGCCAGGCGGagcaGCGUC-UGCugGCu -3'
miRNA:   3'- -AGC--UUGGUCUGCCgg--CGCAGuACG--CG- -5'
5649 3' -56.6 NC_001806.1 + 134694 0.66 0.91023
Target:  5'- gCGAuaACUGGACuGGCCGCaG-CA-GCGCu -3'
miRNA:   3'- aGCU--UGGUCUG-CCGGCG-CaGUaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 133668 0.73 0.522722
Target:  5'- -aGAGCacuacuGGCGG-CGCGUCGUGCGUg -3'
miRNA:   3'- agCUUGgu----CUGCCgGCGCAGUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 133236 0.72 0.592009
Target:  5'- gCGGGCCAucgaGACGGCCGUGggagcCGUGCu- -3'
miRNA:   3'- aGCUUGGU----CUGCCGGCGCa----GUACGcg -5'
5649 3' -56.6 NC_001806.1 + 132618 0.69 0.731106
Target:  5'- cCGuGCCGGccACGGCCGaGUCggcacgggaccugGUGCGCg -3'
miRNA:   3'- aGCuUGGUC--UGCCGGCgCAG-------------UACGCG- -5'
5649 3' -56.6 NC_001806.1 + 130556 0.72 0.612155
Target:  5'- gUCGcGCCGG-CGGaaauugUCGCGcUCAUGCGCa -3'
miRNA:   3'- -AGCuUGGUCuGCC------GGCGC-AGUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 129432 0.69 0.770085
Target:  5'- aCGAugCAGcaACugGGCCGCGUgGaUGCGUu -3'
miRNA:   3'- aGCUugGUC--UG--CCGGCGCAgU-ACGCG- -5'
5649 3' -56.6 NC_001806.1 + 128540 0.8 0.240498
Target:  5'- cCGcAGCCAGACGGCggccCGCGUCcaggGCGCg -3'
miRNA:   3'- aGC-UUGGUCUGCCG----GCGCAGua--CGCG- -5'
5649 3' -56.6 NC_001806.1 + 127768 0.71 0.642466
Target:  5'- gCGGGCCuguGGCGGCCGUcUCGcgauccGCGCa -3'
miRNA:   3'- aGCUUGGu--CUGCCGGCGcAGUa-----CGCG- -5'
5649 3' -56.6 NC_001806.1 + 126122 0.68 0.796475
Target:  5'- gUGGGCCGcgcggacGACGGCgGCGaggCcgGCGCc -3'
miRNA:   3'- aGCUUGGU-------CUGCCGgCGCa--GuaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.