miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5658 3' -58.9 NC_001806.1 + 149790 0.67 0.706269
Target:  5'- cUCACC---UCGcGCUGGGG-GCGGCCc -3'
miRNA:   3'- aAGUGGcguAGC-UGACCUCgCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 148147 0.68 0.666382
Target:  5'- -cCGCC-CGUC-ACggGGGGCGCGGCg -3'
miRNA:   3'- aaGUGGcGUAGcUGa-CCUCGCGCCGg -5'
5658 3' -58.9 NC_001806.1 + 148113 0.67 0.72588
Target:  5'- --aGCCGCGgcCGGCUGGGGgGCuGCg -3'
miRNA:   3'- aagUGGCGUa-GCUGACCUCgCGcCGg -5'
5658 3' -58.9 NC_001806.1 + 148004 0.68 0.636153
Target:  5'- -gCGCCGCGgcucgCGACUggcgGGAGCcGCcGCCg -3'
miRNA:   3'- aaGUGGCGUa----GCUGA----CCUCG-CGcCGG- -5'
5658 3' -58.9 NC_001806.1 + 147648 0.66 0.782547
Target:  5'- --gGCgCGCGUCcGC-GGGGCggGCGGCCg -3'
miRNA:   3'- aagUG-GCGUAGcUGaCCUCG--CGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 146543 0.71 0.468698
Target:  5'- -aCACgG-AUUGGCUGGuguagugGGCGCGGCCa -3'
miRNA:   3'- aaGUGgCgUAGCUGACC-------UCGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 144500 0.68 0.672405
Target:  5'- uUUUGCUGCGUCaucucaGCcuuuauaaaagcgGGGGCGCGGCCg -3'
miRNA:   3'- -AAGUGGCGUAGc-----UGa------------CCUCGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 143095 0.67 0.72588
Target:  5'- uUUCcCCGUgacaccCGACgcugGGGGCGUGGCUg -3'
miRNA:   3'- -AAGuGGCGua----GCUGa---CCUCGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 132613 0.68 0.660348
Target:  5'- gUUCACCGUgccggccacggccgaGUCGGCacgggaccUGGuGCGCggGGCCg -3'
miRNA:   3'- -AAGUGGCG---------------UAGCUG--------ACCuCGCG--CCGG- -5'
5658 3' -58.9 NC_001806.1 + 123365 0.66 0.764091
Target:  5'- aUgGCUGCAaaggCGGCccacuuggaauUGGAgGCGCGGCUa -3'
miRNA:   3'- aAgUGGCGUa---GCUG-----------ACCU-CGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 109395 0.66 0.797826
Target:  5'- -aCcCCGCcccCGACccggcgaugggucgUGGGGCGCGGCg -3'
miRNA:   3'- aaGuGGCGua-GCUG--------------ACCUCGCGCCGg -5'
5658 3' -58.9 NC_001806.1 + 107444 0.67 0.700334
Target:  5'- gUCGCCGCAgCGACcaacgccgaccuccGGAccGCGCuGGCCc -3'
miRNA:   3'- aAGUGGCGUaGCUGa-------------CCU--CGCG-CCGG- -5'
5658 3' -58.9 NC_001806.1 + 103101 0.7 0.516839
Target:  5'- -gCGCuCGaUAUCGACggGGAGCuCGGCCg -3'
miRNA:   3'- aaGUG-GC-GUAGCUGa-CCUCGcGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 102562 0.71 0.507233
Target:  5'- aUCcCCGaacgUGACcGGAGCGCGGUCg -3'
miRNA:   3'- aAGuGGCgua-GCUGaCCUCGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 101893 0.66 0.782547
Target:  5'- -cCGCCGCGUCGACccGA-C-CGGCCg -3'
miRNA:   3'- aaGUGGCGUAGCUGacCUcGcGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 100300 0.66 0.800479
Target:  5'- ----aCGCGgaaugCGGCUGGgguuggGGCGCGGCa -3'
miRNA:   3'- aagugGCGUa----GCUGACC------UCGCGCCGg -5'
5658 3' -58.9 NC_001806.1 + 97037 0.66 0.799596
Target:  5'- uUUCACCGgGaCGACcacgagaccgacaUGGAGCugaaacCGGCCa -3'
miRNA:   3'- -AAGUGGCgUaGCUG-------------ACCUCGc-----GCCGG- -5'
5658 3' -58.9 NC_001806.1 + 96469 0.68 0.646243
Target:  5'- gUUCcCCcgGCA-CGcCUGGGGuCGCGGCCg -3'
miRNA:   3'- -AAGuGG--CGUaGCuGACCUC-GCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 95672 0.66 0.791583
Target:  5'- cUUCugCGCccUGACgGcGGGCGCGGgCa -3'
miRNA:   3'- -AAGugGCGuaGCUGaC-CUCGCGCCgG- -5'
5658 3' -58.9 NC_001806.1 + 95483 0.66 0.800479
Target:  5'- --gGCCGCG--GACgugcgGGAGCGaCGGCg -3'
miRNA:   3'- aagUGGCGUagCUGa----CCUCGC-GCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.