miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5658 3' -58.9 NC_001806.1 + 95425 0.66 0.77338
Target:  5'- gUCGCCGCG--GGCccggGGGGCaGgGGCCc -3'
miRNA:   3'- aAGUGGCGUagCUGa---CCUCG-CgCCGG- -5'
5658 3' -58.9 NC_001806.1 + 95271 0.69 0.618997
Target:  5'- -gCGCUGCGUCGcgugcugGCgcgcaugggggcggGGGGCGCGGCg -3'
miRNA:   3'- aaGUGGCGUAGC-------UGa-------------CCUCGCGCCGg -5'
5658 3' -58.9 NC_001806.1 + 94502 0.75 0.306738
Target:  5'- -cCACCGCcgCG-CUGGAGCGCGuuCg -3'
miRNA:   3'- aaGUGGCGuaGCuGACCUCGCGCcgG- -5'
5658 3' -58.9 NC_001806.1 + 93425 0.76 0.254836
Target:  5'- cUgACCGCG-CGugccCUGGAGCGCGGCa -3'
miRNA:   3'- aAgUGGCGUaGCu---GACCUCGCGCCGg -5'
5658 3' -58.9 NC_001806.1 + 91838 0.67 0.72588
Target:  5'- -gUACCGCG-CGGCgaccGAGCGCgucauGGCCg -3'
miRNA:   3'- aaGUGGCGUaGCUGac--CUCGCG-----CCGG- -5'
5658 3' -58.9 NC_001806.1 + 88687 0.68 0.656321
Target:  5'- -gCGCuCGCAgaGAUcucgUGGGGCGCGGCa -3'
miRNA:   3'- aaGUG-GCGUagCUG----ACCUCGCGCCGg -5'
5658 3' -58.9 NC_001806.1 + 87139 0.68 0.646243
Target:  5'- -cCACUGCGUCGGCccucagGGAGaGCGuGCUg -3'
miRNA:   3'- aaGUGGCGUAGCUGa-----CCUCgCGC-CGG- -5'
5658 3' -58.9 NC_001806.1 + 86073 0.67 0.72588
Target:  5'- --gGCgGCGUCuaGCUcgcGGAGgGCGGCCa -3'
miRNA:   3'- aagUGgCGUAGc-UGA---CCUCgCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 85728 0.66 0.791583
Target:  5'- -cCACCGCccCGAacccugcgguCcGGAgccGCGCGGCCa -3'
miRNA:   3'- aaGUGGCGuaGCU----------GaCCU---CGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 84235 0.67 0.745178
Target:  5'- -cCACCGUgcugaaacaCGGCcgGGGGCGCGGgCg -3'
miRNA:   3'- aaGUGGCGua-------GCUGa-CCUCGCGCCgG- -5'
5658 3' -58.9 NC_001806.1 + 81347 0.66 0.77338
Target:  5'- --gGCCGCAaccaggCGGCcGGGGCGUcGCCc -3'
miRNA:   3'- aagUGGCGUa-----GCUGaCCUCGCGcCGG- -5'
5658 3' -58.9 NC_001806.1 + 77839 0.68 0.645234
Target:  5'- -cCACCGCAggcgaGAUggGGGGCcucgauggaugcgGCGGCCg -3'
miRNA:   3'- aaGUGGCGUag---CUGa-CCUCG-------------CGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 77338 0.66 0.764091
Target:  5'- -aCGCCGCAUgGGCUuauauAGCGCGuacGCCa -3'
miRNA:   3'- aaGUGGCGUAgCUGAcc---UCGCGC---CGG- -5'
5658 3' -58.9 NC_001806.1 + 76887 0.66 0.782547
Target:  5'- gUCGCCGCGUCGAggccCUgcGGAGgucucuCGaggaGGCCg -3'
miRNA:   3'- aAGUGGCGUAGCU----GA--CCUC------GCg---CCGG- -5'
5658 3' -58.9 NC_001806.1 + 76015 0.66 0.781636
Target:  5'- -aCGCCGaCAuguuUCGGgUGGAcaccgagccccugGCGCGGCUu -3'
miRNA:   3'- aaGUGGC-GU----AGCUgACCU-------------CGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 75966 1.09 0.001474
Target:  5'- aUUCACCGCAUCGACUGGAGCGCGGCCu -3'
miRNA:   3'- -AAGUGGCGUAGCUGACCUCGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 75234 0.74 0.320196
Target:  5'- -gCACCGCguccugGUCGACgcggugacggcccUGG-GCGCGGCCg -3'
miRNA:   3'- aaGUGGCG------UAGCUG-------------ACCuCGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 75200 0.7 0.516839
Target:  5'- -aCcCUGCGUCGACggUGGA-UGCGGCCg -3'
miRNA:   3'- aaGuGGCGUAGCUG--ACCUcGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 74482 0.67 0.72588
Target:  5'- -gCGCCGCAgcUCGGguCUGGccgAGCuGCGGCg -3'
miRNA:   3'- aaGUGGCGU--AGCU--GACC---UCG-CGCCGg -5'
5658 3' -58.9 NC_001806.1 + 74044 0.67 0.706269
Target:  5'- --gGCCGUucagguUCGGCUGGAggagGUGCGGaCCc -3'
miRNA:   3'- aagUGGCGu-----AGCUGACCU----CGCGCC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.