Results 21 - 40 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5658 | 3' | -58.9 | NC_001806.1 | + | 66011 | 0.7 | 0.555933 |
Target: 5'- -aCAUCGCGcagGGgUGGGGCGCgGGCCa -3' miRNA: 3'- aaGUGGCGUag-CUgACCUCGCG-CCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 68582 | 0.7 | 0.565847 |
Target: 5'- -gCACCGCggCGGCccUGGGGC-CGGUCc -3' miRNA: 3'- aaGUGGCGuaGCUG--ACCUCGcGCCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 67046 | 0.7 | 0.565847 |
Target: 5'- -gUACCGCAUCGGC-GGcgucGCGCGcGUCg -3' miRNA: 3'- aaGUGGCGUAGCUGaCCu---CGCGC-CGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 24615 | 0.69 | 0.582803 |
Target: 5'- -aCGCCGCcugCGcgcGCUGGGGCcugggcgcgccgcuGCGGCCc -3' miRNA: 3'- aaGUGGCGua-GC---UGACCUCG--------------CGCCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 41615 | 0.69 | 0.592825 |
Target: 5'- aUCGCCGgGg-GugUGGGGCccugcuguuccgugGCGGCCa -3' miRNA: 3'- aAGUGGCgUagCugACCUCG--------------CGCCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 1328 | 0.69 | 0.595838 |
Target: 5'- cUUC-CCGCcgCG---GGGGCGUGGCCa -3' miRNA: 3'- -AAGuGGCGuaGCugaCCUCGCGCCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 30201 | 0.69 | 0.604889 |
Target: 5'- --gGCCGCGUCG---GGAcccgcgcgcccccGCGCGGCCg -3' miRNA: 3'- aagUGGCGUAGCugaCCU-------------CGCGCCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 63182 | 0.69 | 0.605895 |
Target: 5'- gUUGCCGCGggUGcACUGGGGCGUGGg- -3' miRNA: 3'- aAGUGGCGUa-GC-UGACCUCGCGCCgg -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 40580 | 0.69 | 0.605895 |
Target: 5'- -gCGCCGCggGUCGGCgu--GCGCGGCg -3' miRNA: 3'- aaGUGGCG--UAGCUGaccuCGCGCCGg -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 55067 | 0.69 | 0.605895 |
Target: 5'- aUCACCGCGUgGgGCUGGAGgGUcagagacggggGGCg -3' miRNA: 3'- aAGUGGCGUAgC-UGACCUCgCG-----------CCGg -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 50077 | 0.69 | 0.615972 |
Target: 5'- cUCACgGCGUUG-CgucccgucGGGGcCGCGGCCg -3' miRNA: 3'- aAGUGgCGUAGCuGa-------CCUC-GCGCCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 28602 | 0.69 | 0.615972 |
Target: 5'- gUCGCCGUGUUG---GGGGCGUGGUCc -3' miRNA: 3'- aAGUGGCGUAGCugaCCUCGCGCCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 95271 | 0.69 | 0.618997 |
Target: 5'- -gCGCUGCGUCGcgugcugGCgcgcaugggggcggGGGGCGCGGCg -3' miRNA: 3'- aaGUGGCGUAGC-------UGa-------------CCUCGCGCCGg -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 2502 | 0.69 | 0.62606 |
Target: 5'- -cCGCCGCAcgcggccugggCGGCgGGGGCG-GGCCc -3' miRNA: 3'- aaGUGGCGUa----------GCUGaCCUCGCgCCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 21185 | 0.69 | 0.630097 |
Target: 5'- --gACCGCGacgagcggggggcccUCGGgUGGGGCGCGGagaCg -3' miRNA: 3'- aagUGGCGU---------------AGCUgACCUCGCGCCg--G- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 148004 | 0.68 | 0.636153 |
Target: 5'- -gCGCCGCGgcucgCGACUggcgGGAGCcGCcGCCg -3' miRNA: 3'- aaGUGGCGUa----GCUGA----CCUCG-CGcCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 21899 | 0.68 | 0.636153 |
Target: 5'- --gGCCGCAUCGAgCgccgccgGGcccGCGCGGCg -3' miRNA: 3'- aagUGGCGUAGCU-Ga------CCu--CGCGCCGg -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 77839 | 0.68 | 0.645234 |
Target: 5'- -cCACCGCAggcgaGAUggGGGGCcucgauggaugcgGCGGCCg -3' miRNA: 3'- aaGUGGCGUag---CUGa-CCUCG-------------CGCCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 96469 | 0.68 | 0.646243 |
Target: 5'- gUUCcCCcgGCA-CGcCUGGGGuCGCGGCCg -3' miRNA: 3'- -AAGuGG--CGUaGCuGACCUC-GCGCCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 52537 | 0.68 | 0.646243 |
Target: 5'- cUCGCCGgA-CGACgUGGuccGCGgGGCCu -3' miRNA: 3'- aAGUGGCgUaGCUG-ACCu--CGCgCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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