miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5658 3' -58.9 NC_001806.1 + 87139 0.68 0.646243
Target:  5'- -cCACUGCGUCGGCccucagGGAGaGCGuGCUg -3'
miRNA:   3'- aaGUGGCGUAGCUGa-----CCUCgCGC-CGG- -5'
5658 3' -58.9 NC_001806.1 + 23269 0.68 0.650276
Target:  5'- -cCGCCGCGccgCGGgaGGGGCGCaagcgcaagagucccGGCCc -3'
miRNA:   3'- aaGUGGCGUa--GCUgaCCUCGCG---------------CCGG- -5'
5658 3' -58.9 NC_001806.1 + 88687 0.68 0.656321
Target:  5'- -gCGCuCGCAgaGAUcucgUGGGGCGCGGCa -3'
miRNA:   3'- aaGUG-GCGUagCUG----ACCUCGCGCCGg -5'
5658 3' -58.9 NC_001806.1 + 132613 0.68 0.660348
Target:  5'- gUUCACCGUgccggccacggccgaGUCGGCacgggaccUGGuGCGCggGGCCg -3'
miRNA:   3'- -AAGUGGCG---------------UAGCUG--------ACCuCGCG--CCGG- -5'
5658 3' -58.9 NC_001806.1 + 33990 0.68 0.666382
Target:  5'- gUCGCCgggGCAggGGCgGGGGCGUGGgCg -3'
miRNA:   3'- aAGUGG---CGUagCUGaCCUCGCGCCgG- -5'
5658 3' -58.9 NC_001806.1 + 148147 0.68 0.666382
Target:  5'- -cCGCC-CGUC-ACggGGGGCGCGGCg -3'
miRNA:   3'- aaGUGGcGUAGcUGa-CCUCGCGCCGg -5'
5658 3' -58.9 NC_001806.1 + 144500 0.68 0.672405
Target:  5'- uUUUGCUGCGUCaucucaGCcuuuauaaaagcgGGGGCGCGGCCg -3'
miRNA:   3'- -AAGUGGCGUAGc-----UGa------------CCUCGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 65628 0.68 0.676415
Target:  5'- gUgGCCGUGggCGAgaGGGGCcccgGCGGCCu -3'
miRNA:   3'- aAgUGGCGUa-GCUgaCCUCG----CGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 54374 0.68 0.686413
Target:  5'- -aCGCUGCcgCGACUGuGAuGUGCGGaCg -3'
miRNA:   3'- aaGUGGCGuaGCUGAC-CU-CGCGCCgG- -5'
5658 3' -58.9 NC_001806.1 + 20723 0.68 0.686413
Target:  5'- -cCGCCGgGggGGCggGGGGCcgGCGGCCu -3'
miRNA:   3'- aaGUGGCgUagCUGa-CCUCG--CGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 22820 0.68 0.686413
Target:  5'- -cCGCCuGCcgCGGgaucCUGGAgGCGCuGGCCg -3'
miRNA:   3'- aaGUGG-CGuaGCU----GACCU-CGCG-CCGG- -5'
5658 3' -58.9 NC_001806.1 + 23912 0.68 0.686413
Target:  5'- cUCGCCGCugccgggCGAggacCUGGccggcGGCGgGGCCu -3'
miRNA:   3'- aAGUGGCGua-----GCU----GACC-----UCGCgCCGG- -5'
5658 3' -58.9 NC_001806.1 + 41706 0.67 0.695373
Target:  5'- -cCGCCGUGUCcuccccggGACUGGcgGGCGCaaacgcgGGCCa -3'
miRNA:   3'- aaGUGGCGUAG--------CUGACC--UCGCG-------CCGG- -5'
5658 3' -58.9 NC_001806.1 + 10720 0.67 0.695373
Target:  5'- aUCGCCaGCGg-GACcGGAGCGCGcaugcacGCCg -3'
miRNA:   3'- aAGUGG-CGUagCUGaCCUCGCGC-------CGG- -5'
5658 3' -58.9 NC_001806.1 + 107444 0.67 0.700334
Target:  5'- gUCGCCGCAgCGACcaacgccgaccuccGGAccGCGCuGGCCc -3'
miRNA:   3'- aAGUGGCGUaGCUGa-------------CCU--CGCG-CCGG- -5'
5658 3' -58.9 NC_001806.1 + 74044 0.67 0.706269
Target:  5'- --gGCCGUucagguUCGGCUGGAggagGUGCGGaCCc -3'
miRNA:   3'- aagUGGCGu-----AGCUGACCU----CGCGCC-GG- -5'
5658 3' -58.9 NC_001806.1 + 149790 0.67 0.706269
Target:  5'- cUCACC---UCGcGCUGGGG-GCGGCCc -3'
miRNA:   3'- aAGUGGcguAGC-UGACCUCgCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 26693 0.67 0.706269
Target:  5'- -cCACCGCc-CGGCgugggcccggGGGGCGgGGCUg -3'
miRNA:   3'- aaGUGGCGuaGCUGa---------CCUCGCgCCGG- -5'
5658 3' -58.9 NC_001806.1 + 62524 0.67 0.706269
Target:  5'- gUCAUgGauuggcuaugGUCGACguagGGGGCGCGGUCc -3'
miRNA:   3'- aAGUGgCg---------UAGCUGa---CCUCGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 3496 0.67 0.716109
Target:  5'- gUCGuCgGCGUCGGCgUGGcGgGCGGCg -3'
miRNA:   3'- aAGU-GgCGUAGCUG-ACCuCgCGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.