miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5658 3' -58.9 NC_001806.1 + 75234 0.74 0.320196
Target:  5'- -gCACCGCguccugGUCGACgcggugacggcccUGG-GCGCGGCCg -3'
miRNA:   3'- aaGUGGCG------UAGCUG-------------ACCuCGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 94502 0.75 0.306738
Target:  5'- -cCACCGCcgCG-CUGGAGCGCGuuCg -3'
miRNA:   3'- aaGUGGCGuaGCuGACCUCGCGCcgG- -5'
5658 3' -58.9 NC_001806.1 + 93425 0.76 0.254836
Target:  5'- cUgACCGCG-CGugccCUGGAGCGCGGCa -3'
miRNA:   3'- aAgUGGCGUaGCu---GACCUCGCGCCGg -5'
5658 3' -58.9 NC_001806.1 + 4387 0.77 0.226202
Target:  5'- cUCGCCGCcgCccggGGCUuGGGCGCGGCCu -3'
miRNA:   3'- aAGUGGCGuaG----CUGAcCUCGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 22426 0.8 0.148584
Target:  5'- --gGCCGCuUCGGCUGGGGCcuggcgcacgcgGCGGCCg -3'
miRNA:   3'- aagUGGCGuAGCUGACCUCG------------CGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 102562 0.71 0.507233
Target:  5'- aUCcCCGaacgUGACcGGAGCGCGGUCg -3'
miRNA:   3'- aAGuGGCgua-GCUGaCCUCGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 103101 0.7 0.516839
Target:  5'- -gCGCuCGaUAUCGACggGGAGCuCGGCCg -3'
miRNA:   3'- aaGUG-GC-GUAGCUGa-CCUCGcGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 40580 0.69 0.605895
Target:  5'- -gCGCCGCggGUCGGCgu--GCGCGGCg -3'
miRNA:   3'- aaGUGGCG--UAGCUGaccuCGCGCCGg -5'
5658 3' -58.9 NC_001806.1 + 63182 0.69 0.605895
Target:  5'- gUUGCCGCGggUGcACUGGGGCGUGGg- -3'
miRNA:   3'- aAGUGGCGUa-GC-UGACCUCGCGCCgg -5'
5658 3' -58.9 NC_001806.1 + 30201 0.69 0.604889
Target:  5'- --gGCCGCGUCG---GGAcccgcgcgcccccGCGCGGCCg -3'
miRNA:   3'- aagUGGCGUAGCugaCCU-------------CGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 1328 0.69 0.595838
Target:  5'- cUUC-CCGCcgCG---GGGGCGUGGCCa -3'
miRNA:   3'- -AAGuGGCGuaGCugaCCUCGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 41615 0.69 0.592825
Target:  5'- aUCGCCGgGg-GugUGGGGCccugcuguuccgugGCGGCCa -3'
miRNA:   3'- aAGUGGCgUagCugACCUCG--------------CGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 24615 0.69 0.582803
Target:  5'- -aCGCCGCcugCGcgcGCUGGGGCcugggcgcgccgcuGCGGCCc -3'
miRNA:   3'- aaGUGGCGua-GC---UGACCUCG--------------CGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 67046 0.7 0.565847
Target:  5'- -gUACCGCAUCGGC-GGcgucGCGCGcGUCg -3'
miRNA:   3'- aaGUGGCGUAGCUGaCCu---CGCGC-CGG- -5'
5658 3' -58.9 NC_001806.1 + 68582 0.7 0.565847
Target:  5'- -gCACCGCggCGGCccUGGGGC-CGGUCc -3'
miRNA:   3'- aaGUGGCGuaGCUG--ACCUCGcGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 66011 0.7 0.555933
Target:  5'- -aCAUCGCGcagGGgUGGGGCGCgGGCCa -3'
miRNA:   3'- aaGUGGCGUag-CUgACCUCGCG-CCGG- -5'
5658 3' -58.9 NC_001806.1 + 56840 0.7 0.536262
Target:  5'- -aCACCGCcgCGGCc--AGgGCGGCCg -3'
miRNA:   3'- aaGUGGCGuaGCUGaccUCgCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 25929 0.7 0.536262
Target:  5'- -gCGCgCGCG-CGGCgggcgugGGGGCGgGGCCg -3'
miRNA:   3'- aaGUG-GCGUaGCUGa------CCUCGCgCCGG- -5'
5658 3' -58.9 NC_001806.1 + 2782 0.7 0.536262
Target:  5'- -gCGCCGCggCGGCccGGGGCGCcgcgGGCUg -3'
miRNA:   3'- aaGUGGCGuaGCUGa-CCUCGCG----CCGG- -5'
5658 3' -58.9 NC_001806.1 + 75200 0.7 0.516839
Target:  5'- -aCcCUGCGUCGACggUGGA-UGCGGCCg -3'
miRNA:   3'- aaGuGGCGUAGCUG--ACCUcGCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.