miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5658 3' -58.9 NC_001806.1 + 50077 0.69 0.615972
Target:  5'- cUCACgGCGUUG-CgucccgucGGGGcCGCGGCCg -3'
miRNA:   3'- aAGUGgCGUAGCuGa-------CCUC-GCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 50215 0.71 0.460439
Target:  5'- -gCGCUGCuggaccgCGACUGucGCGUGGCCg -3'
miRNA:   3'- aaGUGGCGua-----GCUGACcuCGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 52537 0.68 0.646243
Target:  5'- cUCGCCGgA-CGACgUGGuccGCGgGGCCu -3'
miRNA:   3'- aAGUGGCgUaGCUG-ACCu--CGCgCCGG- -5'
5658 3' -58.9 NC_001806.1 + 54374 0.68 0.686413
Target:  5'- -aCGCUGCcgCGACUGuGAuGUGCGGaCg -3'
miRNA:   3'- aaGUGGCGuaGCUGAC-CU-CGCGCCgG- -5'
5658 3' -58.9 NC_001806.1 + 55067 0.69 0.605895
Target:  5'- aUCACCGCGUgGgGCUGGAGgGUcagagacggggGGCg -3'
miRNA:   3'- aAGUGGCGUAgC-UGACCUCgCG-----------CCGg -5'
5658 3' -58.9 NC_001806.1 + 55198 0.67 0.72588
Target:  5'- cUCGCCGauaAUCagccGCUGGgucGGCaGCGGCCc -3'
miRNA:   3'- aAGUGGCg--UAGc---UGACC---UCG-CGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 56840 0.7 0.536262
Target:  5'- -aCACCGCcgCGGCc--AGgGCGGCCg -3'
miRNA:   3'- aaGUGGCGuaGCUGaccUCgCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 62524 0.67 0.706269
Target:  5'- gUCAUgGauuggcuaugGUCGACguagGGGGCGCGGUCc -3'
miRNA:   3'- aAGUGgCg---------UAGCUGa---CCUCGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 63182 0.69 0.605895
Target:  5'- gUUGCCGCGggUGcACUGGGGCGUGGg- -3'
miRNA:   3'- aAGUGGCGUa-GC-UGACCUCGCGCCgg -5'
5658 3' -58.9 NC_001806.1 + 63431 0.71 0.507233
Target:  5'- gUUCACCGCGUCuuugaacauGACgaaGGGGCucccggucGUGGCCg -3'
miRNA:   3'- -AAGUGGCGUAG---------CUGa--CCUCG--------CGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 65431 0.74 0.350727
Target:  5'- gUCACCGCAaCGAagGGAGCgggggaugccGCGGCCc -3'
miRNA:   3'- aAGUGGCGUaGCUgaCCUCG----------CGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 65628 0.68 0.676415
Target:  5'- gUgGCCGUGggCGAgaGGGGCcccgGCGGCCu -3'
miRNA:   3'- aAgUGGCGUa-GCUgaCCUCG----CGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 65711 0.66 0.782547
Target:  5'- ---cCCGCGcuUCGACgGGAGaggauGCGGCUg -3'
miRNA:   3'- aaguGGCGU--AGCUGaCCUCg----CGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 66011 0.7 0.555933
Target:  5'- -aCAUCGCGcagGGgUGGGGCGCgGGCCa -3'
miRNA:   3'- aaGUGGCGUag-CUgACCUCGCG-CCGG- -5'
5658 3' -58.9 NC_001806.1 + 67046 0.7 0.565847
Target:  5'- -gUACCGCAUCGGC-GGcgucGCGCGcGUCg -3'
miRNA:   3'- aaGUGGCGUAGCUGaCCu---CGCGC-CGG- -5'
5658 3' -58.9 NC_001806.1 + 68582 0.7 0.565847
Target:  5'- -gCACCGCggCGGCccUGGGGC-CGGUCc -3'
miRNA:   3'- aaGUGGCGuaGCUG--ACCUCGcGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 74044 0.67 0.706269
Target:  5'- --gGCCGUucagguUCGGCUGGAggagGUGCGGaCCc -3'
miRNA:   3'- aagUGGCGu-----AGCUGACCU----CGCGCC-GG- -5'
5658 3' -58.9 NC_001806.1 + 74482 0.67 0.72588
Target:  5'- -gCGCCGCAgcUCGGguCUGGccgAGCuGCGGCg -3'
miRNA:   3'- aaGUGGCGU--AGCU--GACC---UCG-CGCCGg -5'
5658 3' -58.9 NC_001806.1 + 75200 0.7 0.516839
Target:  5'- -aCcCUGCGUCGACggUGGA-UGCGGCCg -3'
miRNA:   3'- aaGuGGCGUAGCUG--ACCUcGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 75234 0.74 0.320196
Target:  5'- -gCACCGCguccugGUCGACgcggugacggcccUGG-GCGCGGCCg -3'
miRNA:   3'- aaGUGGCG------UAGCUG-------------ACCuCGCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.