miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5658 3' -58.9 NC_001806.1 + 23912 0.68 0.686413
Target:  5'- cUCGCCGCugccgggCGAggacCUGGccggcGGCGgGGCCu -3'
miRNA:   3'- aAGUGGCGua-----GCU----GACC-----UCGCgCCGG- -5'
5658 3' -58.9 NC_001806.1 + 24615 0.69 0.582803
Target:  5'- -aCGCCGCcugCGcgcGCUGGGGCcugggcgcgccgcuGCGGCCc -3'
miRNA:   3'- aaGUGGCGua-GC---UGACCUCG--------------CGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 25929 0.7 0.536262
Target:  5'- -gCGCgCGCG-CGGCgggcgugGGGGCGgGGCCg -3'
miRNA:   3'- aaGUG-GCGUaGCUGa------CCUCGCgCCGG- -5'
5658 3' -58.9 NC_001806.1 + 26693 0.67 0.706269
Target:  5'- -cCACCGCc-CGGCgugggcccggGGGGCGgGGCUg -3'
miRNA:   3'- aaGUGGCGuaGCUGa---------CCUCGCgCCGG- -5'
5658 3' -58.9 NC_001806.1 + 27284 0.67 0.72588
Target:  5'- --gGCCGCcagcgCGGC-GGGGCcCGGCCa -3'
miRNA:   3'- aagUGGCGua---GCUGaCCUCGcGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 27858 0.66 0.761281
Target:  5'- --gGCCGCcccgCGGugggccugccucccCUGGGacGCGCGGCCa -3'
miRNA:   3'- aagUGGCGua--GCU--------------GACCU--CGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 28602 0.69 0.615972
Target:  5'- gUCGCCGUGUUG---GGGGCGUGGUCc -3'
miRNA:   3'- aAGUGGCGUAGCugaCCUCGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 29955 0.66 0.782547
Target:  5'- gUCGCgaGCcgCGGCgccgcggGGGGCGUcuGGCCc -3'
miRNA:   3'- aAGUGg-CGuaGCUGa------CCUCGCG--CCGG- -5'
5658 3' -58.9 NC_001806.1 + 30201 0.69 0.604889
Target:  5'- --gGCCGCGUCG---GGAcccgcgcgcccccGCGCGGCCg -3'
miRNA:   3'- aagUGGCGUAGCugaCCU-------------CGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 30389 0.66 0.791583
Target:  5'- --gGgCGCGUgCGACggUGGcGCGCGGCUc -3'
miRNA:   3'- aagUgGCGUA-GCUG--ACCuCGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 30491 0.66 0.800479
Target:  5'- -cCGCCGCcucuGUCGAgCaGGAG-GCGGCg -3'
miRNA:   3'- aaGUGGCG----UAGCU-GaCCUCgCGCCGg -5'
5658 3' -58.9 NC_001806.1 + 30618 0.67 0.716109
Target:  5'- -gCACCcccccucCGACUcagggccgggGGGGCGCGGCCa -3'
miRNA:   3'- aaGUGGcgua---GCUGA----------CCUCGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 31106 0.67 0.72588
Target:  5'- --gGCCGCGgucccCGGCUGGAGcCGCcGCa -3'
miRNA:   3'- aagUGGCGUa----GCUGACCUC-GCGcCGg -5'
5658 3' -58.9 NC_001806.1 + 33663 0.66 0.791583
Target:  5'- gUCGCgGgcCGUCuGCUGGccCGCGGCCa -3'
miRNA:   3'- aAGUGgC--GUAGcUGACCucGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 33990 0.68 0.666382
Target:  5'- gUCGCCgggGCAggGGCgGGGGCGUGGgCg -3'
miRNA:   3'- aAGUGG---CGUagCUGaCCUCGCGCCgG- -5'
5658 3' -58.9 NC_001806.1 + 37708 0.73 0.407468
Target:  5'- -cCGCCGCGcgcUCGGagaUGGAGCGCaGGaCCa -3'
miRNA:   3'- aaGUGGCGU---AGCUg--ACCUCGCG-CC-GG- -5'
5658 3' -58.9 NC_001806.1 + 37898 0.66 0.782547
Target:  5'- cUCACUGCcgCGccacgccucGCcaugGGGGCGCcggGGCCg -3'
miRNA:   3'- aAGUGGCGuaGC---------UGa---CCUCGCG---CCGG- -5'
5658 3' -58.9 NC_001806.1 + 40580 0.69 0.605895
Target:  5'- -gCGCCGCggGUCGGCgu--GCGCGGCg -3'
miRNA:   3'- aaGUGGCG--UAGCUGaccuCGCGCCGg -5'
5658 3' -58.9 NC_001806.1 + 41615 0.69 0.592825
Target:  5'- aUCGCCGgGg-GugUGGGGCccugcuguuccgugGCGGCCa -3'
miRNA:   3'- aAGUGGCgUagCugACCUCG--------------CGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 41706 0.67 0.695373
Target:  5'- -cCGCCGUGUCcuccccggGACUGGcgGGCGCaaacgcgGGCCa -3'
miRNA:   3'- aaGUGGCGUAG--------CUGACC--UCGCG-------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.