miRNA display CGI


Results 21 - 40 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5658 3' -58.9 NC_001806.1 + 29955 0.66 0.782547
Target:  5'- gUCGCgaGCcgCGGCgccgcggGGGGCGUcuGGCCc -3'
miRNA:   3'- aAGUGg-CGuaGCUGa------CCUCGCG--CCGG- -5'
5658 3' -58.9 NC_001806.1 + 95672 0.66 0.791583
Target:  5'- cUUCugCGCccUGACgGcGGGCGCGGgCa -3'
miRNA:   3'- -AAGugGCGuaGCUGaC-CUCGCGCCgG- -5'
5658 3' -58.9 NC_001806.1 + 109395 0.66 0.797826
Target:  5'- -aCcCCGCcccCGACccggcgaugggucgUGGGGCGCGGCg -3'
miRNA:   3'- aaGuGGCGua-GCUG--------------ACCUCGCGCCGg -5'
5658 3' -58.9 NC_001806.1 + 97037 0.66 0.799596
Target:  5'- uUUCACCGgGaCGACcacgagaccgacaUGGAGCugaaacCGGCCa -3'
miRNA:   3'- -AAGUGGCgUaGCUG-------------ACCUCGc-----GCCGG- -5'
5658 3' -58.9 NC_001806.1 + 148113 0.67 0.72588
Target:  5'- --aGCCGCGgcCGGCUGGGGgGCuGCg -3'
miRNA:   3'- aagUGGCGUa-GCUGACCUCgCGcCGg -5'
5658 3' -58.9 NC_001806.1 + 74044 0.67 0.706269
Target:  5'- --gGCCGUucagguUCGGCUGGAggagGUGCGGaCCc -3'
miRNA:   3'- aagUGGCGu-----AGCUGACCU----CGCGCC-GG- -5'
5658 3' -58.9 NC_001806.1 + 149790 0.67 0.706269
Target:  5'- cUCACC---UCGcGCUGGGG-GCGGCCc -3'
miRNA:   3'- aAGUGGcguAGC-UGACCUCgCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 10720 0.67 0.695373
Target:  5'- aUCGCCaGCGg-GACcGGAGCGCGcaugcacGCCg -3'
miRNA:   3'- aAGUGG-CGUagCUGaCCUCGCGC-------CGG- -5'
5658 3' -58.9 NC_001806.1 + 62524 0.67 0.706269
Target:  5'- gUCAUgGauuggcuaugGUCGACguagGGGGCGCGGUCc -3'
miRNA:   3'- aAGUGgCg---------UAGCUGa---CCUCGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 86073 0.67 0.72588
Target:  5'- --gGCgGCGUCuaGCUcgcGGAGgGCGGCCa -3'
miRNA:   3'- aagUGgCGUAGc-UGA---CCUCgCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 74482 0.67 0.72588
Target:  5'- -gCGCCGCAgcUCGGguCUGGccgAGCuGCGGCg -3'
miRNA:   3'- aaGUGGCGU--AGCU--GACC---UCG-CGCCGg -5'
5658 3' -58.9 NC_001806.1 + 55198 0.67 0.72588
Target:  5'- cUCGCCGauaAUCagccGCUGGgucGGCaGCGGCCc -3'
miRNA:   3'- aAGUGGCg--UAGc---UGACC---UCG-CGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 30618 0.67 0.716109
Target:  5'- -gCACCcccccucCGACUcagggccgggGGGGCGCGGCCa -3'
miRNA:   3'- aaGUGGcgua---GCUGA----------CCUCGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 3496 0.67 0.716109
Target:  5'- gUCGuCgGCGUCGGCgUGGcGgGCGGCg -3'
miRNA:   3'- aAGU-GgCGUAGCUG-ACCuCgCGCCGg -5'
5658 3' -58.9 NC_001806.1 + 41706 0.67 0.695373
Target:  5'- -cCGCCGUGUCcuccccggGACUGGcgGGCGCaaacgcgGGCCa -3'
miRNA:   3'- aaGUGGCGUAG--------CUGACC--UCGCG-------CCGG- -5'
5658 3' -58.9 NC_001806.1 + 143095 0.67 0.72588
Target:  5'- uUUCcCCGUgacaccCGACgcugGGGGCGUGGCUg -3'
miRNA:   3'- -AAGuGGCGua----GCUGa---CCUCGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 22779 0.67 0.72588
Target:  5'- -gCGCCGCGcccaGGCcGGccGCGUGGCCg -3'
miRNA:   3'- aaGUGGCGUag--CUGaCCu-CGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 91838 0.67 0.72588
Target:  5'- -gUACCGCG-CGGCgaccGAGCGCgucauGGCCg -3'
miRNA:   3'- aaGUGGCGUaGCUGac--CUCGCG-----CCGG- -5'
5658 3' -58.9 NC_001806.1 + 84235 0.67 0.745178
Target:  5'- -cCACCGUgcugaaacaCGGCcgGGGGCGCGGgCg -3'
miRNA:   3'- aaGUGGCGua-------GCUGa-CCUCGCGCCgG- -5'
5658 3' -58.9 NC_001806.1 + 5349 0.67 0.735573
Target:  5'- cUUCGuCCGCGuaUCGGCgucccGGCGCGGCg -3'
miRNA:   3'- -AAGU-GGCGU--AGCUGacc--UCGCGCCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.