Results 41 - 60 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5658 | 3' | -58.9 | NC_001806.1 | + | 27284 | 0.67 | 0.72588 |
Target: 5'- --gGCCGCcagcgCGGC-GGGGCcCGGCCa -3' miRNA: 3'- aagUGGCGua---GCUGaCCUCGcGCCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 22779 | 0.67 | 0.72588 |
Target: 5'- -gCGCCGCGcccaGGCcGGccGCGUGGCCg -3' miRNA: 3'- aaGUGGCGUag--CUGaCCu-CGCGCCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 143095 | 0.67 | 0.72588 |
Target: 5'- uUUCcCCGUgacaccCGACgcugGGGGCGUGGCUg -3' miRNA: 3'- -AAGuGGCGua----GCUGa---CCUCGCGCCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 86073 | 0.67 | 0.72588 |
Target: 5'- --gGCgGCGUCuaGCUcgcGGAGgGCGGCCa -3' miRNA: 3'- aagUGgCGUAGc-UGA---CCUCgCGCCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 23912 | 0.68 | 0.686413 |
Target: 5'- cUCGCCGCugccgggCGAggacCUGGccggcGGCGgGGCCu -3' miRNA: 3'- aAGUGGCGua-----GCU----GACC-----UCGCgCCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 22820 | 0.68 | 0.686413 |
Target: 5'- -cCGCCuGCcgCGGgaucCUGGAgGCGCuGGCCg -3' miRNA: 3'- aaGUGG-CGuaGCU----GACCU-CGCG-CCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 20723 | 0.68 | 0.686413 |
Target: 5'- -cCGCCGgGggGGCggGGGGCcgGCGGCCu -3' miRNA: 3'- aaGUGGCgUagCUGa-CCUCG--CGCCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 54374 | 0.68 | 0.686413 |
Target: 5'- -aCGCUGCcgCGACUGuGAuGUGCGGaCg -3' miRNA: 3'- aaGUGGCGuaGCUGAC-CU-CGCGCCgG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 65628 | 0.68 | 0.676415 |
Target: 5'- gUgGCCGUGggCGAgaGGGGCcccgGCGGCCu -3' miRNA: 3'- aAgUGGCGUa-GCUgaCCUCG----CGCCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 21899 | 0.68 | 0.636153 |
Target: 5'- --gGCCGCAUCGAgCgccgccgGGcccGCGCGGCg -3' miRNA: 3'- aagUGGCGUAGCU-Ga------CCu--CGCGCCGg -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 148004 | 0.68 | 0.636153 |
Target: 5'- -gCGCCGCGgcucgCGACUggcgGGAGCcGCcGCCg -3' miRNA: 3'- aaGUGGCGUa----GCUGA----CCUCG-CGcCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 77839 | 0.68 | 0.645234 |
Target: 5'- -cCACCGCAggcgaGAUggGGGGCcucgauggaugcgGCGGCCg -3' miRNA: 3'- aaGUGGCGUag---CUGa-CCUCG-------------CGCCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 87139 | 0.68 | 0.646243 |
Target: 5'- -cCACUGCGUCGGCccucagGGAGaGCGuGCUg -3' miRNA: 3'- aaGUGGCGUAGCUGa-----CCUCgCGC-CGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 96469 | 0.68 | 0.646243 |
Target: 5'- gUUCcCCcgGCA-CGcCUGGGGuCGCGGCCg -3' miRNA: 3'- -AAGuGG--CGUaGCuGACCUC-GCGCCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 52537 | 0.68 | 0.646243 |
Target: 5'- cUCGCCGgA-CGACgUGGuccGCGgGGCCu -3' miRNA: 3'- aAGUGGCgUaGCUG-ACCu--CGCgCCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 23269 | 0.68 | 0.650276 |
Target: 5'- -cCGCCGCGccgCGGgaGGGGCGCaagcgcaagagucccGGCCc -3' miRNA: 3'- aaGUGGCGUa--GCUgaCCUCGCG---------------CCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 88687 | 0.68 | 0.656321 |
Target: 5'- -gCGCuCGCAgaGAUcucgUGGGGCGCGGCa -3' miRNA: 3'- aaGUG-GCGUagCUG----ACCUCGCGCCGg -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 132613 | 0.68 | 0.660348 |
Target: 5'- gUUCACCGUgccggccacggccgaGUCGGCacgggaccUGGuGCGCggGGCCg -3' miRNA: 3'- -AAGUGGCG---------------UAGCUG--------ACCuCGCG--CCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 33990 | 0.68 | 0.666382 |
Target: 5'- gUCGCCgggGCAggGGCgGGGGCGUGGgCg -3' miRNA: 3'- aAGUGG---CGUagCUGaCCUCGCGCCgG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 148147 | 0.68 | 0.666382 |
Target: 5'- -cCGCC-CGUC-ACggGGGGCGCGGCg -3' miRNA: 3'- aaGUGGcGUAGcUGa-CCUCGCGCCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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