miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5658 3' -58.9 NC_001806.1 + 2782 0.7 0.536262
Target:  5'- -gCGCCGCggCGGCccGGGGCGCcgcgGGCUg -3'
miRNA:   3'- aaGUGGCGuaGCUGa-CCUCGCG----CCGG- -5'
5658 3' -58.9 NC_001806.1 + 75200 0.7 0.516839
Target:  5'- -aCcCUGCGUCGACggUGGA-UGCGGCCg -3'
miRNA:   3'- aaGuGGCGUAGCUG--ACCUcGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 103101 0.7 0.516839
Target:  5'- -gCGCuCGaUAUCGACggGGAGCuCGGCCg -3'
miRNA:   3'- aaGUG-GC-GUAGCUGa-CCUCGcGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 28602 0.69 0.615972
Target:  5'- gUCGCCGUGUUG---GGGGCGUGGUCc -3'
miRNA:   3'- aAGUGGCGUAGCugaCCUCGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 50077 0.69 0.615972
Target:  5'- cUCACgGCGUUG-CgucccgucGGGGcCGCGGCCg -3'
miRNA:   3'- aAGUGgCGUAGCuGa-------CCUC-GCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 95271 0.69 0.618997
Target:  5'- -gCGCUGCGUCGcgugcugGCgcgcaugggggcggGGGGCGCGGCg -3'
miRNA:   3'- aaGUGGCGUAGC-------UGa-------------CCUCGCGCCGg -5'
5658 3' -58.9 NC_001806.1 + 2502 0.69 0.62606
Target:  5'- -cCGCCGCAcgcggccugggCGGCgGGGGCG-GGCCc -3'
miRNA:   3'- aaGUGGCGUa----------GCUGaCCUCGCgCCGG- -5'
5658 3' -58.9 NC_001806.1 + 21185 0.69 0.630097
Target:  5'- --gACCGCGacgagcggggggcccUCGGgUGGGGCGCGGagaCg -3'
miRNA:   3'- aagUGGCGU---------------AGCUgACCUCGCGCCg--G- -5'
5658 3' -58.9 NC_001806.1 + 55067 0.69 0.605895
Target:  5'- aUCACCGCGUgGgGCUGGAGgGUcagagacggggGGCg -3'
miRNA:   3'- aAGUGGCGUAgC-UGACCUCgCG-----------CCGg -5'
5658 3' -58.9 NC_001806.1 + 40580 0.69 0.605895
Target:  5'- -gCGCCGCggGUCGGCgu--GCGCGGCg -3'
miRNA:   3'- aaGUGGCG--UAGCUGaccuCGCGCCGg -5'
5658 3' -58.9 NC_001806.1 + 63182 0.69 0.605895
Target:  5'- gUUGCCGCGggUGcACUGGGGCGUGGg- -3'
miRNA:   3'- aAGUGGCGUa-GC-UGACCUCGCGCCgg -5'
5658 3' -58.9 NC_001806.1 + 30201 0.69 0.604889
Target:  5'- --gGCCGCGUCG---GGAcccgcgcgcccccGCGCGGCCg -3'
miRNA:   3'- aagUGGCGUAGCugaCCU-------------CGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 1328 0.69 0.595838
Target:  5'- cUUC-CCGCcgCG---GGGGCGUGGCCa -3'
miRNA:   3'- -AAGuGGCGuaGCugaCCUCGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 41615 0.69 0.592825
Target:  5'- aUCGCCGgGg-GugUGGGGCccugcuguuccgugGCGGCCa -3'
miRNA:   3'- aAGUGGCgUagCugACCUCG--------------CGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 24615 0.69 0.582803
Target:  5'- -aCGCCGCcugCGcgcGCUGGGGCcugggcgcgccgcuGCGGCCc -3'
miRNA:   3'- aaGUGGCGua-GC---UGACCUCG--------------CGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 96469 0.68 0.646243
Target:  5'- gUUCcCCcgGCA-CGcCUGGGGuCGCGGCCg -3'
miRNA:   3'- -AAGuGG--CGUaGCuGACCUC-GCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 87139 0.68 0.646243
Target:  5'- -cCACUGCGUCGGCccucagGGAGaGCGuGCUg -3'
miRNA:   3'- aaGUGGCGUAGCUGa-----CCUCgCGC-CGG- -5'
5658 3' -58.9 NC_001806.1 + 77839 0.68 0.645234
Target:  5'- -cCACCGCAggcgaGAUggGGGGCcucgauggaugcgGCGGCCg -3'
miRNA:   3'- aaGUGGCGUag---CUGa-CCUCG-------------CGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 148004 0.68 0.636153
Target:  5'- -gCGCCGCGgcucgCGACUggcgGGAGCcGCcGCCg -3'
miRNA:   3'- aaGUGGCGUa----GCUGA----CCUCG-CGcCGG- -5'
5658 3' -58.9 NC_001806.1 + 52537 0.68 0.646243
Target:  5'- cUCGCCGgA-CGACgUGGuccGCGgGGCCu -3'
miRNA:   3'- aAGUGGCgUaGCUG-ACCu--CGCgCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.