miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5664 5' -62.6 NC_001806.1 + 27150 0.65 0.696433
Target:  5'- uCCGCGGagcucccgggagCUCCGCaccaagCCGcucUCCGGAGa -3'
miRNA:   3'- -GGCGCCa-----------GGGGCGga----GGCa--AGGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 127209 0.66 0.688856
Target:  5'- aCGCGGgCCCCggggagacagcGCCUgCGUUCauCGGAc -3'
miRNA:   3'- gGCGCCaGGGG-----------CGGAgGCAAG--GCCUc -5'
5664 5' -62.6 NC_001806.1 + 73284 0.66 0.688856
Target:  5'- aCCGCGuGcUCCgCCGCC-CUGgcCCGcGAGg -3'
miRNA:   3'- -GGCGC-C-AGG-GGCGGaGGCaaGGC-CUC- -5'
5664 5' -62.6 NC_001806.1 + 146920 0.66 0.679347
Target:  5'- cCCGauGuUCCCCGUCUCCaugUCCaGGAu -3'
miRNA:   3'- -GGCgcC-AGGGGCGGAGGca-AGG-CCUc -5'
5664 5' -62.6 NC_001806.1 + 43145 0.66 0.679347
Target:  5'- cCCGCGGUUCCCGUCUUCcugCCc--- -3'
miRNA:   3'- -GGCGCCAGGGGCGGAGGcaaGGccuc -5'
5664 5' -62.6 NC_001806.1 + 5853 0.66 0.679347
Target:  5'- cCCcCGGU-CCCGCCcgCCGgacgCCGGGa -3'
miRNA:   3'- -GGcGCCAgGGGCGGa-GGCaa--GGCCUc -5'
5664 5' -62.6 NC_001806.1 + 49599 0.66 0.668849
Target:  5'- gCgGCGGggcccguUCCCCGCC-CaagguggagGUUCUGGAGg -3'
miRNA:   3'- -GgCGCC-------AGGGGCGGaGg--------CAAGGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 24799 0.66 0.660236
Target:  5'- cCCGgGGgCCCUGCCgCCGgcgccgcCCGGGa -3'
miRNA:   3'- -GGCgCCaGGGGCGGaGGCaa-----GGCCUc -5'
5664 5' -62.6 NC_001806.1 + 42634 0.66 0.660236
Target:  5'- gCCGCGGcggCgUCGCgUCCGgUgCGGGGg -3'
miRNA:   3'- -GGCGCCa--GgGGCGgAGGCaAgGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 33168 0.66 0.660236
Target:  5'- aCGCGGcCUUCGCC-CCGUga-GGGGa -3'
miRNA:   3'- gGCGCCaGGGGCGGaGGCAaggCCUC- -5'
5664 5' -62.6 NC_001806.1 + 31107 0.66 0.660236
Target:  5'- gCCGCGGUCCCCGgCUggagCCG--CCGc-- -3'
miRNA:   3'- -GGCGCCAGGGGC-GGa---GGCaaGGCcuc -5'
5664 5' -62.6 NC_001806.1 + 57606 0.66 0.660236
Target:  5'- gCCGCcaaGG-CCCCGCC-CCGUca-GGGGa -3'
miRNA:   3'- -GGCG---CCaGGGGCGGaGGCAaggCCUC- -5'
5664 5' -62.6 NC_001806.1 + 24116 0.66 0.650646
Target:  5'- aCGCGGgaCCUgGCCUUCG--CCGGGGc -3'
miRNA:   3'- gGCGCCa-GGGgCGGAGGCaaGGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 150105 0.66 0.650646
Target:  5'- aCCGCGGggcggCCCCGUCcCCGgggaccaacCCGGc- -3'
miRNA:   3'- -GGCGCCa----GGGGCGGaGGCaa-------GGCCuc -5'
5664 5' -62.6 NC_001806.1 + 86383 0.66 0.641044
Target:  5'- uCCGCGGggcgCUCgGCUaacgcggcggCCGcUCCGGAGa -3'
miRNA:   3'- -GGCGCCa---GGGgCGGa---------GGCaAGGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 65090 0.66 0.641044
Target:  5'- aCGUGG-CCCCGCCggacaCG-UCCgaGGAGg -3'
miRNA:   3'- gGCGCCaGGGGCGGag---GCaAGG--CCUC- -5'
5664 5' -62.6 NC_001806.1 + 46058 0.67 0.631436
Target:  5'- cCCGgaGGUCCCCcggacgcggcGUC-CCGUUuCCGGGGc -3'
miRNA:   3'- -GGCg-CCAGGGG----------CGGaGGCAA-GGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 44903 0.67 0.631436
Target:  5'- uCCGCGGUCCCCGagucgauaagacCCaguauuaCGUggugcCCGGGGc -3'
miRNA:   3'- -GGCGCCAGGGGC------------GGag-----GCAa----GGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 150928 0.67 0.621828
Target:  5'- aCCGCcucGGcCUCCGCCacCCGgcgCCGGAa -3'
miRNA:   3'- -GGCG---CCaGGGGCGGa-GGCaa-GGCCUc -5'
5664 5' -62.6 NC_001806.1 + 74895 0.67 0.621828
Target:  5'- gCCgGCGGgcuggucggaccUCCCCGaggCCGUUCgGGGGg -3'
miRNA:   3'- -GG-CGCC------------AGGGGCggaGGCAAGgCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.