Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5666 | 5' | -68.2 | NC_001806.1 | + | 24634 | 0.66 | 0.373255 |
Target: 5'- gGGCCUG-GGcgcGCCgCUGCGgCCCgUGUa -3' miRNA: 3'- gCCGGGCaCC---CGG-GACGCgGGGgACA- -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 120857 | 0.66 | 0.358357 |
Target: 5'- gGGacCCCG-GcGGCCCcugGCGCCgCCUGg -3' miRNA: 3'- gCC--GGGCaC-CCGGGa--CGCGGgGGACa -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 106696 | 0.66 | 0.358357 |
Target: 5'- gGGCUCuucccGGGCCCccggGCgGCCCCCgGUa -3' miRNA: 3'- gCCGGGca---CCCGGGa---CG-CGGGGGaCA- -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 27861 | 0.66 | 0.38086 |
Target: 5'- -cGCCCcgcgGUGGG-CCUGCcUCCCCUGg -3' miRNA: 3'- gcCGGG----CACCCgGGACGcGGGGGACa -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 121430 | 0.66 | 0.365754 |
Target: 5'- gGGCCCGgGGGCCUggugGCaCCUCCc-- -3' miRNA: 3'- gCCGGGCaCCCGGGa---CGcGGGGGaca -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 17198 | 0.66 | 0.365754 |
Target: 5'- uGGaCCGUaGGGCCCUuaaauuuuuagaGCaGCCCCCg-- -3' miRNA: 3'- gCCgGGCA-CCCGGGA------------CG-CGGGGGaca -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 80022 | 0.66 | 0.388568 |
Target: 5'- gCGGgCCGcagcGGcGCCUUacGCGCCCCgCUGUc -3' miRNA: 3'- -GCCgGGCa---CC-CGGGA--CGCGGGG-GACA- -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 2424 | 0.66 | 0.373255 |
Target: 5'- gGGCCCGaggcgcgcaggGGGCCaaagagGCgGCCCCCg-- -3' miRNA: 3'- gCCGGGCa----------CCCGGga----CG-CGGGGGaca -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 87249 | 0.66 | 0.38086 |
Target: 5'- cCGGaa-GUGGGgucaaggaCCCUG-GCCCCCUGg -3' miRNA: 3'- -GCCgggCACCC--------GGGACgCGGGGGACa -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 123238 | 0.66 | 0.358357 |
Target: 5'- -cGCCCacGcGGCCCUGCGCCgacgCCUGg -3' miRNA: 3'- gcCGGGcaC-CCGGGACGCGGg---GGACa -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 69102 | 0.66 | 0.351066 |
Target: 5'- -aGCCCGcgcucGGCCUgUGCGCCCCCgGg -3' miRNA: 3'- gcCGGGCac---CCGGG-ACGCGGGGGaCa -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 5676 | 0.66 | 0.38086 |
Target: 5'- gGGCggGUGGGUCC-GCGCCCCg--- -3' miRNA: 3'- gCCGggCACCCGGGaCGCGGGGgaca -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 22926 | 0.66 | 0.388568 |
Target: 5'- gGGaCCCGcGGGCCCcGCuUCCCCg-- -3' miRNA: 3'- gCC-GGGCaCCCGGGaCGcGGGGGaca -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 2944 | 0.66 | 0.357623 |
Target: 5'- gCGGCCgGgccGGGCCgggacucuugcgcUUGCGCCCCUc-- -3' miRNA: 3'- -GCCGGgCa--CCCGG-------------GACGCGGGGGaca -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 42751 | 0.66 | 0.38086 |
Target: 5'- uGGUCCGguuguagcgGGGuCCCgUGCGCCagggcgUCCUGUa -3' miRNA: 3'- gCCGGGCa--------CCC-GGG-ACGCGG------GGGACA- -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 23425 | 0.66 | 0.351066 |
Target: 5'- -cGCCCccgGGGCCCgagccCGCCCCCg-- -3' miRNA: 3'- gcCGGGca-CCCGGGac---GCGGGGGaca -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 45388 | 0.66 | 0.388568 |
Target: 5'- uGcCCCGgGGGCCCUgGUGCCCUUuuaUGUa -3' miRNA: 3'- gCcGGGCaCCCGGGA-CGCGGGGG---ACA- -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 96507 | 0.66 | 0.373255 |
Target: 5'- gCGGCgaaCGgGGGCCCUGCcacuccggcgccGCccgCCCCUGg -3' miRNA: 3'- -GCCGg--GCaCCCGGGACG------------CG---GGGGACa -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 77533 | 0.66 | 0.365009 |
Target: 5'- aGGCCCG-GGGCCCcuggugcUGCGCgaggCCaCCaGUa -3' miRNA: 3'- gCCGGGCaCCCGGG-------ACGCG----GG-GGaCA- -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 147303 | 0.66 | 0.38086 |
Target: 5'- gGGUCCc-GGGCCCacccuggccGCGCCCCCc-- -3' miRNA: 3'- gCCGGGcaCCCGGGa--------CGCGGGGGaca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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