Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5666 | 5' | -68.2 | NC_001806.1 | + | 72137 | 1.06 | 0.00043 |
Target: 5'- cCGGCCCGUGGGCCCUGCGCCCCCUGUc -3' miRNA: 3'- -GCCGGGCACCCGGGACGCGGGGGACA- -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 98142 | 0.79 | 0.042606 |
Target: 5'- gCGGCCCG-GGGCCUgcuacaGcCGCCCCCUGg -3' miRNA: 3'- -GCCGGGCaCCCGGGa-----C-GCGGGGGACa -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 24795 | 0.77 | 0.065114 |
Target: 5'- aCGGCCCGgGGGCCCUgccgccgGCGCCgCCCgGg -3' miRNA: 3'- -GCCGGGCaCCCGGGA-------CGCGG-GGGaCa -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 46105 | 0.76 | 0.07211 |
Target: 5'- cCGGCCCG-GGGCCUgcgcggGCGCCUCCg-- -3' miRNA: 3'- -GCCGGGCaCCCGGGa-----CGCGGGGGaca -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 109368 | 0.75 | 0.083662 |
Target: 5'- uGGCCCGcuUGGcGCCC-GCGCCCCCcGa -3' miRNA: 3'- gCCGGGC--ACC-CGGGaCGCGGGGGaCa -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 23516 | 0.74 | 0.109555 |
Target: 5'- cCGGCCCGccgaGGGCCC--CGaCCCCCUGg -3' miRNA: 3'- -GCCGGGCa---CCCGGGacGC-GGGGGACa -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 22057 | 0.74 | 0.112251 |
Target: 5'- uGGCCCGgcgccGGGCCCc-CGCCCCCgGg -3' miRNA: 3'- gCCGGGCa----CCCGGGacGCGGGGGaCa -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 30199 | 0.74 | 0.115009 |
Target: 5'- gCGGCCgCGUcGGGaCCCgcGCGCCCCCg-- -3' miRNA: 3'- -GCCGG-GCA-CCC-GGGa-CGCGGGGGaca -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 21007 | 0.73 | 0.11783 |
Target: 5'- gGGUCCGUGGGUCU--CGCCCCCUc- -3' miRNA: 3'- gCCGGGCACCCGGGacGCGGGGGAca -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 20476 | 0.73 | 0.126683 |
Target: 5'- gGGCCC--GGGCCC--CGCCCCCUGc -3' miRNA: 3'- gCCGGGcaCCCGGGacGCGGGGGACa -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 57042 | 0.73 | 0.129769 |
Target: 5'- gGGCCCG-GGGCCg-GgGCCCCCg-- -3' miRNA: 3'- gCCGGGCaCCCGGgaCgCGGGGGaca -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 30650 | 0.73 | 0.129769 |
Target: 5'- gCGGCCaggGUGGGCCCggGaC-CCCCCUGa -3' miRNA: 3'- -GCCGGg--CACCCGGGa-C-GcGGGGGACa -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 27071 | 0.73 | 0.136149 |
Target: 5'- aGGCCCGUgcccGGGCCCUG-GCCCgCg-- -3' miRNA: 3'- gCCGGGCA----CCCGGGACgCGGGgGaca -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 106876 | 0.72 | 0.146262 |
Target: 5'- gGGCgCCGagcaGGGCCC-GCGCCCCCc-- -3' miRNA: 3'- gCCG-GGCa---CCCGGGaCGCGGGGGaca -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 23110 | 0.72 | 0.157055 |
Target: 5'- gGGCCC-UGGGCCCcGCGCUgCCg-- -3' miRNA: 3'- gCCGGGcACCCGGGaCGCGGgGGaca -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 70511 | 0.71 | 0.164645 |
Target: 5'- -cGCCUG-GGGCCCUG-GCCCCCcGa -3' miRNA: 3'- gcCGGGCaCCCGGGACgCGGGGGaCa -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 44673 | 0.71 | 0.164645 |
Target: 5'- aGGgCCGUagucacgcuugGGGCCCcgaGCGCCCCCUc- -3' miRNA: 3'- gCCgGGCA-----------CCCGGGa--CGCGGGGGAca -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 5098 | 0.71 | 0.164645 |
Target: 5'- gCGGCCCGUcggugGGGCCCggggagccgggGCGCUgCUUGUu -3' miRNA: 3'- -GCCGGGCA-----CCCGGGa----------CGCGGgGGACA- -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 131993 | 0.71 | 0.164645 |
Target: 5'- gGGCCgGU-GGCCCUGUucGCCCCgCUGc -3' miRNA: 3'- gCCGGgCAcCCGGGACG--CGGGG-GACa -5' |
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5666 | 5' | -68.2 | NC_001806.1 | + | 132505 | 0.71 | 0.168563 |
Target: 5'- -cGCCCccgGGGCCCUG-GCCCCCg-- -3' miRNA: 3'- gcCGGGca-CCCGGGACgCGGGGGaca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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