miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5666 5' -68.2 NC_001806.1 + 45388 0.66 0.388568
Target:  5'- uGcCCCGgGGGCCCUgGUGCCCUUuuaUGUa -3'
miRNA:   3'- gCcGGGCaCCCGGGA-CGCGGGGG---ACA- -5'
5666 5' -68.2 NC_001806.1 + 27071 0.73 0.136149
Target:  5'- aGGCCCGUgcccGGGCCCUG-GCCCgCg-- -3'
miRNA:   3'- gCCGGGCA----CCCGGGACgCGGGgGaca -5'
5666 5' -68.2 NC_001806.1 + 106876 0.72 0.146262
Target:  5'- gGGCgCCGagcaGGGCCC-GCGCCCCCc-- -3'
miRNA:   3'- gCCG-GGCa---CCCGGGaCGCGGGGGaca -5'
5666 5' -68.2 NC_001806.1 + 23110 0.72 0.157055
Target:  5'- gGGCCC-UGGGCCCcGCGCUgCCg-- -3'
miRNA:   3'- gCCGGGcACCCGGGaCGCGGgGGaca -5'
5666 5' -68.2 NC_001806.1 + 131993 0.71 0.164645
Target:  5'- gGGCCgGU-GGCCCUGUucGCCCCgCUGc -3'
miRNA:   3'- gCCGGgCAcCCGGGACG--CGGGG-GACa -5'
5666 5' -68.2 NC_001806.1 + 5098 0.71 0.164645
Target:  5'- gCGGCCCGUcggugGGGCCCggggagccgggGCGCUgCUUGUu -3'
miRNA:   3'- -GCCGGGCA-----CCCGGGa----------CGCGGgGGACA- -5'
5666 5' -68.2 NC_001806.1 + 44673 0.71 0.164645
Target:  5'- aGGgCCGUagucacgcuugGGGCCCcgaGCGCCCCCUc- -3'
miRNA:   3'- gCCgGGCA-----------CCCGGGa--CGCGGGGGAca -5'
5666 5' -68.2 NC_001806.1 + 70511 0.71 0.164645
Target:  5'- -cGCCUG-GGGCCCUG-GCCCCCcGa -3'
miRNA:   3'- gcCGGGCaCCCGGGACgCGGGGGaCa -5'
5666 5' -68.2 NC_001806.1 + 132505 0.71 0.168563
Target:  5'- -cGCCCccgGGGCCCUG-GCCCCCg-- -3'
miRNA:   3'- gcCGGGca-CCCGGGACgCGGGGGaca -5'
5666 5' -68.2 NC_001806.1 + 57042 0.73 0.129769
Target:  5'- gGGCCCG-GGGCCg-GgGCCCCCg-- -3'
miRNA:   3'- gCCGGGCaCCCGGgaCgCGGGGGaca -5'
5666 5' -68.2 NC_001806.1 + 30650 0.73 0.129769
Target:  5'- gCGGCCaggGUGGGCCCggGaC-CCCCCUGa -3'
miRNA:   3'- -GCCGGg--CACCCGGGa-C-GcGGGGGACa -5'
5666 5' -68.2 NC_001806.1 + 20476 0.73 0.126683
Target:  5'- gGGCCC--GGGCCC--CGCCCCCUGc -3'
miRNA:   3'- gCCGGGcaCCCGGGacGCGGGGGACa -5'
5666 5' -68.2 NC_001806.1 + 98142 0.79 0.042606
Target:  5'- gCGGCCCG-GGGCCUgcuacaGcCGCCCCCUGg -3'
miRNA:   3'- -GCCGGGCaCCCGGGa-----C-GCGGGGGACa -5'
5666 5' -68.2 NC_001806.1 + 24795 0.77 0.065114
Target:  5'- aCGGCCCGgGGGCCCUgccgccgGCGCCgCCCgGg -3'
miRNA:   3'- -GCCGGGCaCCCGGGA-------CGCGG-GGGaCa -5'
5666 5' -68.2 NC_001806.1 + 46105 0.76 0.07211
Target:  5'- cCGGCCCG-GGGCCUgcgcggGCGCCUCCg-- -3'
miRNA:   3'- -GCCGGGCaCCCGGGa-----CGCGGGGGaca -5'
5666 5' -68.2 NC_001806.1 + 109368 0.75 0.083662
Target:  5'- uGGCCCGcuUGGcGCCC-GCGCCCCCcGa -3'
miRNA:   3'- gCCGGGC--ACC-CGGGaCGCGGGGGaCa -5'
5666 5' -68.2 NC_001806.1 + 23516 0.74 0.109555
Target:  5'- cCGGCCCGccgaGGGCCC--CGaCCCCCUGg -3'
miRNA:   3'- -GCCGGGCa---CCCGGGacGC-GGGGGACa -5'
5666 5' -68.2 NC_001806.1 + 22057 0.74 0.112251
Target:  5'- uGGCCCGgcgccGGGCCCc-CGCCCCCgGg -3'
miRNA:   3'- gCCGGGCa----CCCGGGacGCGGGGGaCa -5'
5666 5' -68.2 NC_001806.1 + 30199 0.74 0.115009
Target:  5'- gCGGCCgCGUcGGGaCCCgcGCGCCCCCg-- -3'
miRNA:   3'- -GCCGG-GCA-CCC-GGGa-CGCGGGGGaca -5'
5666 5' -68.2 NC_001806.1 + 21007 0.73 0.11783
Target:  5'- gGGUCCGUGGGUCU--CGCCCCCUc- -3'
miRNA:   3'- gCCGGGCACCCGGGacGCGGGGGAca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.