miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5666 5' -68.2 NC_001806.1 + 2424 0.66 0.373255
Target:  5'- gGGCCCGaggcgcgcaggGGGCCaaagagGCgGCCCCCg-- -3'
miRNA:   3'- gCCGGGCa----------CCCGGga----CG-CGGGGGaca -5'
5666 5' -68.2 NC_001806.1 + 2944 0.66 0.357623
Target:  5'- gCGGCCgGgccGGGCCgggacucuugcgcUUGCGCCCCUc-- -3'
miRNA:   3'- -GCCGGgCa--CCCGG-------------GACGCGGGGGaca -5'
5666 5' -68.2 NC_001806.1 + 3671 0.67 0.32983
Target:  5'- cCGGCgCCG-GGGCUCcccGCgGCCCCCg-- -3'
miRNA:   3'- -GCCG-GGCaCCCGGGa--CG-CGGGGGaca -5'
5666 5' -68.2 NC_001806.1 + 4191 0.68 0.265986
Target:  5'- gGGCCCGgcgccGGGCCacgGCuCCCCgCUGa -3'
miRNA:   3'- gCCGGGCa----CCCGGga-CGcGGGG-GACa -5'
5666 5' -68.2 NC_001806.1 + 5098 0.71 0.164645
Target:  5'- gCGGCCCGUcggugGGGCCCggggagccgggGCGCUgCUUGUu -3'
miRNA:   3'- -GCCGGGCA-----CCCGGGa----------CGCGGgGGACA- -5'
5666 5' -68.2 NC_001806.1 + 5676 0.66 0.38086
Target:  5'- gGGCggGUGGGUCC-GCGCCCCg--- -3'
miRNA:   3'- gCCGggCACCCGGGaCGCGGGGgaca -5'
5666 5' -68.2 NC_001806.1 + 5897 0.67 0.3361
Target:  5'- gCGGCCCaaGGGCCgcccgccUUGcCGCCCCCc-- -3'
miRNA:   3'- -GCCGGGcaCCCGG-------GAC-GCGGGGGaca -5'
5666 5' -68.2 NC_001806.1 + 13017 0.68 0.290246
Target:  5'- gGGCCU-UGGGCCC-GUGCCaCCCg-- -3'
miRNA:   3'- gCCGGGcACCCGGGaCGCGG-GGGaca -5'
5666 5' -68.2 NC_001806.1 + 17198 0.66 0.365754
Target:  5'- uGGaCCGUaGGGCCCUuaaauuuuuagaGCaGCCCCCg-- -3'
miRNA:   3'- gCCgGGCA-CCCGGGA------------CG-CGGGGGaca -5'
5666 5' -68.2 NC_001806.1 + 19910 0.68 0.265986
Target:  5'- aGGCCCccgGGGU---GCGUCCCCUGUg -3'
miRNA:   3'- gCCGGGca-CCCGggaCGCGGGGGACA- -5'
5666 5' -68.2 NC_001806.1 + 20476 0.73 0.126683
Target:  5'- gGGCCC--GGGCCC--CGCCCCCUGc -3'
miRNA:   3'- gCCGGGcaCCCGGGacGCGGGGGACa -5'
5666 5' -68.2 NC_001806.1 + 21007 0.73 0.11783
Target:  5'- gGGUCCGUGGGUCU--CGCCCCCUc- -3'
miRNA:   3'- gCCGGGCACCCGGGacGCGGGGGAca -5'
5666 5' -68.2 NC_001806.1 + 22057 0.74 0.112251
Target:  5'- uGGCCCGgcgccGGGCCCc-CGCCCCCgGg -3'
miRNA:   3'- gCCGGGCa----CCCGGGacGCGGGGGaCa -5'
5666 5' -68.2 NC_001806.1 + 22664 0.67 0.309556
Target:  5'- aCGGCgCCGcgGGGaUCCU-CGCCgCCCUGg -3'
miRNA:   3'- -GCCG-GGCa-CCC-GGGAcGCGG-GGGACa -5'
5666 5' -68.2 NC_001806.1 + 22926 0.66 0.388568
Target:  5'- gGGaCCCGcGGGCCCcGCuUCCCCg-- -3'
miRNA:   3'- gCC-GGGCaCCCGGGaCGcGGGGGaca -5'
5666 5' -68.2 NC_001806.1 + 23110 0.72 0.157055
Target:  5'- gGGCCC-UGGGCCCcGCGCUgCCg-- -3'
miRNA:   3'- gCCGGGcACCCGGGaCGCGGgGGaca -5'
5666 5' -68.2 NC_001806.1 + 23310 0.68 0.2865
Target:  5'- cCGGCCCGgccgcccggaggcgGcGGCCC-GCGaCCCCCg-- -3'
miRNA:   3'- -GCCGGGCa-------------C-CCGGGaCGC-GGGGGaca -5'
5666 5' -68.2 NC_001806.1 + 23377 0.68 0.290246
Target:  5'- cCGGCUCGgacGCCC-GCGCCCCCc-- -3'
miRNA:   3'- -GCCGGGCaccCGGGaCGCGGGGGaca -5'
5666 5' -68.2 NC_001806.1 + 23425 0.66 0.351066
Target:  5'- -cGCCCccgGGGCCCgagccCGCCCCCg-- -3'
miRNA:   3'- gcCGGGca-CCCGGGac---GCGGGGGaca -5'
5666 5' -68.2 NC_001806.1 + 23516 0.74 0.109555
Target:  5'- cCGGCCCGccgaGGGCCC--CGaCCCCCUGg -3'
miRNA:   3'- -GCCGGGCa---CCCGGGacGC-GGGGGACa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.