miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5692 5' -58.4 NC_001806.1 + 95024 0.66 0.84716
Target:  5'- cGAGuugcaGCAGGAGacCGCCGCgGUGG--CCg -3'
miRNA:   3'- uCUC-----UGUCCUU--GCGGCGgCACCcaGG- -5'
5692 5' -58.4 NC_001806.1 + 74475 0.66 0.84716
Target:  5'- ---aACAGGcGCGCCGCagcucGGGUCUg -3'
miRNA:   3'- ucucUGUCCuUGCGGCGgca--CCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 29097 0.66 0.839273
Target:  5'- cGAGACGGG---GCUGCUG-GGG-CCg -3'
miRNA:   3'- uCUCUGUCCuugCGGCGGCaCCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 51095 0.66 0.839273
Target:  5'- gGGAGACgaGGGGGcCGCCGCCcUGcGGg-- -3'
miRNA:   3'- -UCUCUG--UCCUU-GCGGCGGcAC-CCagg -5'
5692 5' -58.4 NC_001806.1 + 2692 0.66 0.836068
Target:  5'- uGGGcccCGGGGGCuGCCGCCGccagccgcccaggGGGUCg -3'
miRNA:   3'- uCUCu--GUCCUUG-CGGCGGCa------------CCCAGg -5'
5692 5' -58.4 NC_001806.1 + 31708 0.66 0.831207
Target:  5'- gGGAGugGGGGuGCGUgGgaGUGGGggugCCa -3'
miRNA:   3'- -UCUCugUCCU-UGCGgCggCACCCa---GG- -5'
5692 5' -58.4 NC_001806.1 + 20864 0.66 0.822969
Target:  5'- cAGAGACAGaccgucaGACGCuCGCCGcgccGGGacgCCg -3'
miRNA:   3'- -UCUCUGUCc------UUGCG-GCGGCa---CCCa--GG- -5'
5692 5' -58.4 NC_001806.1 + 115071 0.66 0.822969
Target:  5'- cGuGGCGGGAAa-CCGCC-UGGGgCCg -3'
miRNA:   3'- uCuCUGUCCUUgcGGCGGcACCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 75209 0.66 0.822969
Target:  5'- --cGACGGuGGAUGCgGCCGUGcGGgcgcaCCg -3'
miRNA:   3'- ucuCUGUC-CUUGCGgCGGCAC-CCa----GG- -5'
5692 5' -58.4 NC_001806.1 + 33123 0.66 0.822969
Target:  5'- cGGGGCccGGAcCGCCGCgGUcGGGggCCc -3'
miRNA:   3'- uCUCUGu-CCUuGCGGCGgCA-CCCa-GG- -5'
5692 5' -58.4 NC_001806.1 + 75977 0.66 0.806003
Target:  5'- --cGACuGGAGCGCgGCCuucgGGG-CCg -3'
miRNA:   3'- ucuCUGuCCUUGCGgCGGca--CCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 66833 0.66 0.806003
Target:  5'- gGGuGGCcGGuguGCGCCGCCuccugGGGcCCg -3'
miRNA:   3'- -UCuCUGuCCu--UGCGGCGGca---CCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 1496 0.66 0.806003
Target:  5'- -----gGGGGGCGUCGUCGUcGGGcUCCa -3'
miRNA:   3'- ucucugUCCUUGCGGCGGCA-CCC-AGG- -5'
5692 5' -58.4 NC_001806.1 + 142022 0.66 0.806003
Target:  5'- aGGGcGGCgAGGAGCGCCGCCGg----CCc -3'
miRNA:   3'- -UCU-CUG-UCCUUGCGGCGGCacccaGG- -5'
5692 5' -58.4 NC_001806.1 + 4436 0.66 0.806003
Target:  5'- -cGGGCGGGGGCGgCGuCCGcccgGGGgcugCCg -3'
miRNA:   3'- ucUCUGUCCUUGCgGC-GGCa---CCCa---GG- -5'
5692 5' -58.4 NC_001806.1 + 101200 0.66 0.806003
Target:  5'- cGGAGGCAGGGcCGCCcgcaCCGUauccGGaUCCa -3'
miRNA:   3'- -UCUCUGUCCUuGCGGc---GGCA----CCcAGG- -5'
5692 5' -58.4 NC_001806.1 + 69719 0.66 0.806003
Target:  5'- uGAGACGGccGAGCGCCGCUuuaGUuccGGUCa -3'
miRNA:   3'- uCUCUGUC--CUUGCGGCGG---CAc--CCAGg -5'
5692 5' -58.4 NC_001806.1 + 30029 0.66 0.806003
Target:  5'- cGGAGGCGGG---GCgGCCGaGGGgCCg -3'
miRNA:   3'- -UCUCUGUCCuugCGgCGGCaCCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 84070 0.67 0.797292
Target:  5'- gGGAGuCGGGGccccagcugcGCGCUGCCGcgGaGGcCCg -3'
miRNA:   3'- -UCUCuGUCCU----------UGCGGCGGCa-C-CCaGG- -5'
5692 5' -58.4 NC_001806.1 + 76066 0.67 0.797292
Target:  5'- --uGGCGGGGGgGCUGCUGgagcGGGcCCa -3'
miRNA:   3'- ucuCUGUCCUUgCGGCGGCa---CCCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.