miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5695 3' -57.9 NC_001806.1 + 150721 0.73 0.419398
Target:  5'- gCCCGCCCUGUgAGGGcGGGcuggcUCCAAGc -3'
miRNA:   3'- gGGGCGGGGCAgUCCC-CUU-----AGGUUUu -5'
5695 3' -57.9 NC_001806.1 + 149537 0.7 0.610243
Target:  5'- aCCCCgGUCCCuguauauauaggGUCAGGGGGuUCCGc-- -3'
miRNA:   3'- -GGGG-CGGGG------------CAGUCCCCUuAGGUuuu -5'
5695 3' -57.9 NC_001806.1 + 149230 0.69 0.677875
Target:  5'- cUCCCGCCCUccagacgcaccggaGUCGGGGGuc-CCAc-- -3'
miRNA:   3'- -GGGGCGGGG--------------CAGUCCCCuuaGGUuuu -5'
5695 3' -57.9 NC_001806.1 + 148762 0.66 0.846424
Target:  5'- cCCCCGUCCUcUCgAGGGGGGgcgCCc--- -3'
miRNA:   3'- -GGGGCGGGGcAG-UCCCCUUa--GGuuuu -5'
5695 3' -57.9 NC_001806.1 + 148144 0.67 0.786807
Target:  5'- gCCCCG-CCCGUCacGGGGGGcgCg---- -3'
miRNA:   3'- -GGGGCgGGGCAG--UCCCCUuaGguuuu -5'
5695 3' -57.9 NC_001806.1 + 147675 0.68 0.728375
Target:  5'- gCUCCGCCCCGggggccggggcgCGGGGGcgggccCCGGAGg -3'
miRNA:   3'- -GGGGCGGGGCa-----------GUCCCCuua---GGUUUU- -5'
5695 3' -57.9 NC_001806.1 + 147284 0.74 0.410774
Target:  5'- -gCCGCCgaggaCGUCAGGGGggUCCc--- -3'
miRNA:   3'- ggGGCGGg----GCAGUCCCCuuAGGuuuu -5'
5695 3' -57.9 NC_001806.1 + 144320 0.68 0.739993
Target:  5'- cCCCCG-CCCGUguGGGu-AUCCGGc- -3'
miRNA:   3'- -GGGGCgGGGCAguCCCcuUAGGUUuu -5'
5695 3' -57.9 NC_001806.1 + 142155 0.67 0.777681
Target:  5'- --gCGUCCCGUCgcgGGGuGGggUCCGAc- -3'
miRNA:   3'- gggGCGGGGCAG---UCC-CCuuAGGUUuu -5'
5695 3' -57.9 NC_001806.1 + 137238 0.69 0.670843
Target:  5'- gCCUGCCCC-UCAGGGaGuuUCCGu-- -3'
miRNA:   3'- gGGGCGGGGcAGUCCC-CuuAGGUuuu -5'
5695 3' -57.9 NC_001806.1 + 132568 0.68 0.710732
Target:  5'- aCCCGUCCCGUacuuugccgucCuGGGGuuUCCGGGu -3'
miRNA:   3'- gGGGCGGGGCA-----------GuCCCCuuAGGUUUu -5'
5695 3' -57.9 NC_001806.1 + 119307 0.74 0.410774
Target:  5'- aCCCGCCCauCGUC-GGGGcGUCCGAc- -3'
miRNA:   3'- gGGGCGGG--GCAGuCCCCuUAGGUUuu -5'
5695 3' -57.9 NC_001806.1 + 115750 0.7 0.590091
Target:  5'- gCCCCGCCCU-UCcuuGGGGAGUgCGAu- -3'
miRNA:   3'- -GGGGCGGGGcAGu--CCCCUUAgGUUuu -5'
5695 3' -57.9 NC_001806.1 + 113310 0.71 0.570058
Target:  5'- cCCCCGgCCgGccCGGGGGAgAUCCAGGc -3'
miRNA:   3'- -GGGGCgGGgCa-GUCCCCU-UAGGUUUu -5'
5695 3' -57.9 NC_001806.1 + 112923 0.73 0.428131
Target:  5'- uUCCCGCCCCGccagcuguuuuuUUGGGGGAAggaccgCCAGGu -3'
miRNA:   3'- -GGGGCGGGGC------------AGUCCCCUUa-----GGUUUu -5'
5695 3' -57.9 NC_001806.1 + 104141 0.66 0.846424
Target:  5'- aCCCCGCCCagCGUCuugucauuGGcGAAUUCGAAc -3'
miRNA:   3'- -GGGGCGGG--GCAGu-------CCcCUUAGGUUUu -5'
5695 3' -57.9 NC_001806.1 + 103196 0.7 0.590091
Target:  5'- gCUCCGCCgCCGUCucccGGGGGAggUUAAAGa -3'
miRNA:   3'- -GGGGCGG-GGCAG----UCCCCUuaGGUUUU- -5'
5695 3' -57.9 NC_001806.1 + 96539 0.67 0.768428
Target:  5'- gCCCGCCCCuggCGcccccccaacGGGGGAcCCGAAAc -3'
miRNA:   3'- gGGGCGGGGca-GU----------CCCCUUaGGUUUU- -5'
5695 3' -57.9 NC_001806.1 + 93903 0.69 0.690883
Target:  5'- -gCCGCCCCGaagaGGGGGAccCCGGGg -3'
miRNA:   3'- ggGGCGGGGCag--UCCCCUuaGGUUUu -5'
5695 3' -57.9 NC_001806.1 + 91423 0.68 0.700836
Target:  5'- aCCgCGCCCCucGUCGGcGGAAcCCAGGAa -3'
miRNA:   3'- -GGgGCGGGG--CAGUCcCCUUaGGUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.