miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5695 5' -63 NC_001806.1 + 23541 0.66 0.660911
Target:  5'- ---cUGGGcGGCUggcggcggcagCCCCCGGGGcccagccacacGGCGGc -3'
miRNA:   3'- ccaaACCC-CCGG-----------GGGGGCCUU-----------CCGCC- -5'
5695 5' -63 NC_001806.1 + 47026 0.66 0.654179
Target:  5'- cGUUUGGGGGUUuucucuucccgcgCCgUCGGGcgucccacacucucuGGGCGGg -3'
miRNA:   3'- cCAAACCCCCGG-------------GGgGGCCU---------------UCCGCC- -5'
5695 5' -63 NC_001806.1 + 24801 0.66 0.651291
Target:  5'- ----cGGGGGCCCUgCCGcc-GGCGc -3'
miRNA:   3'- ccaaaCCCCCGGGGgGGCcuuCCGCc -5'
5695 5' -63 NC_001806.1 + 28217 0.66 0.651291
Target:  5'- ----gGGGGGCgCCauaUUGGggGGCGc -3'
miRNA:   3'- ccaaaCCCCCGgGGg--GGCCuuCCGCc -5'
5695 5' -63 NC_001806.1 + 30915 0.66 0.651291
Target:  5'- -----cGGGGCCgUCCCCGc-GGGCGGc -3'
miRNA:   3'- ccaaacCCCCGG-GGGGGCcuUCCGCC- -5'
5695 5' -63 NC_001806.1 + 27758 0.66 0.650328
Target:  5'- gGGUucuUUGGgggacaccggguuGGGCCCCCaaauCGGggGcCGGg -3'
miRNA:   3'- -CCA---AACC-------------CCCGGGGGg---GCCuuCcGCC- -5'
5695 5' -63 NC_001806.1 + 55635 0.66 0.641657
Target:  5'- gGGUUguugGGGGGCUggCCggCUCGGuggGGGUGGu -3'
miRNA:   3'- -CCAAa---CCCCCGG--GG--GGGCCu--UCCGCC- -5'
5695 5' -63 NC_001806.1 + 148122 0.66 0.641657
Target:  5'- cGGcugGGGGGCUgcgugagacgCCCCgcccgucaCGGggGGCGcGg -3'
miRNA:   3'- -CCaaaCCCCCGG----------GGGG--------GCCuuCCGC-C- -5'
5695 5' -63 NC_001806.1 + 54677 0.66 0.632016
Target:  5'- cGGUgaGGGGucGUCCCCCaGGAaccAGGCa- -3'
miRNA:   3'- -CCAaaCCCC--CGGGGGGgCCU---UCCGcc -5'
5695 5' -63 NC_001806.1 + 93897 0.66 0.632016
Target:  5'- ----cGGGaGGCCgCCCCGaaGAGGgGGa -3'
miRNA:   3'- ccaaaCCC-CCGGgGGGGCc-UUCCgCC- -5'
5695 5' -63 NC_001806.1 + 55077 0.66 0.632016
Target:  5'- gGGgcUGGaGGGUCagagaCGGggGGCGGa -3'
miRNA:   3'- -CCaaACC-CCCGGgggg-GCCuuCCGCC- -5'
5695 5' -63 NC_001806.1 + 53233 0.66 0.62816
Target:  5'- ----gGGGGGauccgcccuauuuuCCCCCCCGGGccgcaccGGGCc- -3'
miRNA:   3'- ccaaaCCCCC--------------GGGGGGGCCU-------UCCGcc -5'
5695 5' -63 NC_001806.1 + 43759 0.66 0.622376
Target:  5'- --cUUGGGGcacccccacacGCCgCCCCCGGAGguuacgcuGGCGc -3'
miRNA:   3'- ccaAACCCC-----------CGG-GGGGGCCUU--------CCGCc -5'
5695 5' -63 NC_001806.1 + 60605 0.66 0.622376
Target:  5'- ----cGGGGGCCaCCCCGGccccAGGUc- -3'
miRNA:   3'- ccaaaCCCCCGGgGGGGCCu---UCCGcc -5'
5695 5' -63 NC_001806.1 + 25851 0.66 0.621413
Target:  5'- uGGUUucaccugUGGcagcccGGGCCCCCCgCGGgcGcGCGc -3'
miRNA:   3'- -CCAA-------ACC------CCCGGGGGG-GCCuuC-CGCc -5'
5695 5' -63 NC_001806.1 + 99683 0.66 0.618522
Target:  5'- gGGgagUGGGGGCaugggacgccggaCCCUgGGGAGGaccguaGGg -3'
miRNA:   3'- -CCaa-ACCCCCGg------------GGGGgCCUUCCg-----CC- -5'
5695 5' -63 NC_001806.1 + 149712 0.66 0.612743
Target:  5'- aGGgucGGGGGUCCCCCaacauGGCGc -3'
miRNA:   3'- -CCaaaCCCCCGGGGGGgccuuCCGCc -5'
5695 5' -63 NC_001806.1 + 77855 0.66 0.612743
Target:  5'- ----gGGGGGCCUCgaUGGAugcGGCGGc -3'
miRNA:   3'- ccaaaCCCCCGGGGggGCCUu--CCGCC- -5'
5695 5' -63 NC_001806.1 + 94540 0.66 0.612743
Target:  5'- gGGgcggUGGGGucgggccuuaucGUCCCCCCGGAGcuuaGCGa -3'
miRNA:   3'- -CCaa--ACCCC------------CGGGGGGGCCUUc---CGCc -5'
5695 5' -63 NC_001806.1 + 119586 0.66 0.612743
Target:  5'- cGGUgcUGGcGGGUcuggagCCCCCCGGcgGGGGCc- -3'
miRNA:   3'- -CCAa-ACC-CCCG------GGGGGGCC--UUCCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.