miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5697 3' -55.2 NC_001806.1 + 99585 0.66 0.937599
Target:  5'- gGGGggGAAcgcGGGCUCCGucgguagagGGGCG-CGCg -3'
miRNA:   3'- -CUCuuCUUc--UCCGGGGC---------UUCGCaGCG- -5'
5697 3' -55.2 NC_001806.1 + 21193 0.66 0.932641
Target:  5'- -cGAGcGGGGGGCCCUcGGGUGgggCGCg -3'
miRNA:   3'- cuCUUcUUCUCCGGGGcUUCGCa--GCG- -5'
5697 3' -55.2 NC_001806.1 + 21290 0.66 0.932641
Target:  5'- cGGGAcGGGAGGGcCCCCGcGGCGg-GCa -3'
miRNA:   3'- -CUCU-UCUUCUCcGGGGCuUCGCagCG- -5'
5697 3' -55.2 NC_001806.1 + 91784 0.66 0.932641
Target:  5'- ---------cGGCCCUGAAGCG-CGCg -3'
miRNA:   3'- cucuucuucuCCGGGGCUUCGCaGCG- -5'
5697 3' -55.2 NC_001806.1 + 147484 0.66 0.932132
Target:  5'- gGAGggGAgcgGGGcGGCgCCGGagggggcGGCGcCGCg -3'
miRNA:   3'- -CUCuuCU---UCU-CCGgGGCU-------UCGCaGCG- -5'
5697 3' -55.2 NC_001806.1 + 68694 0.66 0.927443
Target:  5'- -------cGAGGCCCUuggGGAGaCGUCGCu -3'
miRNA:   3'- cucuucuuCUCCGGGG---CUUC-GCAGCG- -5'
5697 3' -55.2 NC_001806.1 + 134245 0.66 0.924208
Target:  5'- -cGggGggGcGGCCCCGGcAGCcggaaugaggagcucGUCGg -3'
miRNA:   3'- cuCuuCuuCuCCGGGGCU-UCG---------------CAGCg -5'
5697 3' -55.2 NC_001806.1 + 13141 0.66 0.922003
Target:  5'- gGGGGAGAGGcAGGCUgaCGggGgGaugCGCa -3'
miRNA:   3'- -CUCUUCUUC-UCCGGg-GCuuCgCa--GCG- -5'
5697 3' -55.2 NC_001806.1 + 147835 0.66 0.922003
Target:  5'- --uGGGGAGAGGCCggGggGgaGUCGCu -3'
miRNA:   3'- cucUUCUUCUCCGGggCuuCg-CAGCG- -5'
5697 3' -55.2 NC_001806.1 + 20402 0.66 0.922003
Target:  5'- cGGGAccGGGGGGCCCgGGgacggccaacgGGCG-CGCg -3'
miRNA:   3'- -CUCUucUUCUCCGGGgCU-----------UCGCaGCG- -5'
5697 3' -55.2 NC_001806.1 + 43293 0.66 0.918624
Target:  5'- cGGAGGcggagccgcggcugcAGGAGGCCCUGgcG-GUCGUu -3'
miRNA:   3'- cUCUUC---------------UUCUCCGGGGCuuCgCAGCG- -5'
5697 3' -55.2 NC_001806.1 + 57669 0.66 0.916322
Target:  5'- aAGgcGGAGaAGGCgCCGggGC-UUGCu -3'
miRNA:   3'- cUCuuCUUC-UCCGgGGCuuCGcAGCG- -5'
5697 3' -55.2 NC_001806.1 + 79273 0.66 0.916322
Target:  5'- cGGAGGGcucguuGGGGCCCgGAAGCcUgGCc -3'
miRNA:   3'- cUCUUCUu-----CUCCGGGgCUUCGcAgCG- -5'
5697 3' -55.2 NC_001806.1 + 77301 0.66 0.916322
Target:  5'- cGGuGGAGGA-GUUCCGggGCG-CGCg -3'
miRNA:   3'- cUCuUCUUCUcCGGGGCuuCGCaGCG- -5'
5697 3' -55.2 NC_001806.1 + 86732 0.66 0.916322
Target:  5'- uGGAAu-AG-GGCCCgGggGCG-CGCa -3'
miRNA:   3'- cUCUUcuUCuCCGGGgCuuCGCaGCG- -5'
5697 3' -55.2 NC_001806.1 + 144614 0.67 0.910402
Target:  5'- cAGccGggGcGGCCaaGggGCGUCGg -3'
miRNA:   3'- cUCuuCuuCuCCGGggCuuCGCAGCg -5'
5697 3' -55.2 NC_001806.1 + 2811 0.67 0.909797
Target:  5'- uGGGcGGggGcgggcucGGGCCCCGggGgCGUggaggggggCGCg -3'
miRNA:   3'- -CUCuUCuuC-------UCCGGGGCuuC-GCA---------GCG- -5'
5697 3' -55.2 NC_001806.1 + 83811 0.67 0.906735
Target:  5'- -cGAGGAGGGGGCggggucggcgcgggaUCCGGcacgcAGCcGUCGCu -3'
miRNA:   3'- cuCUUCUUCUCCG---------------GGGCU-----UCG-CAGCG- -5'
5697 3' -55.2 NC_001806.1 + 59487 0.67 0.904243
Target:  5'- aGAGAcAGGcucGGGuGUCCCGGAcCGUCGCa -3'
miRNA:   3'- -CUCU-UCUu--CUC-CGGGGCUUcGCAGCG- -5'
5697 3' -55.2 NC_001806.1 + 140444 0.67 0.904243
Target:  5'- uGGGggGggGGcgguuacucGGcCCCCGAGGCca-GCa -3'
miRNA:   3'- -CUCuuCuuCU---------CC-GGGGCUUCGcagCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.