miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5697 5' -64.8 NC_001806.1 + 2927 0.66 0.567819
Target:  5'- cGGGCCgCCGcCUCCGGGcGgCCgggCCg- -3'
miRNA:   3'- -CCCGG-GGCaGGGGCCC-CaGGaa-GGac -5'
5697 5' -64.8 NC_001806.1 + 7400 0.66 0.567819
Target:  5'- gGGaGCCCCGgucUCCCCGGGaGcCCcggUCUc- -3'
miRNA:   3'- -CC-CGGGGC---AGGGGCCC-CaGGa--AGGac -5'
5697 5' -64.8 NC_001806.1 + 125939 0.66 0.567819
Target:  5'- uGGGCCCUG-CUCCGGcGGggCCUcacgaccgcaUCCa- -3'
miRNA:   3'- -CCCGGGGCaGGGGCC-CCa-GGA----------AGGac -5'
5697 5' -64.8 NC_001806.1 + 48964 0.66 0.566876
Target:  5'- cGGCCCCGUCgcucccguccauuCCCaucgcgagGGGGUCCggcggcaCCUa -3'
miRNA:   3'- cCCGGGGCAG-------------GGG--------CCCCAGGaa-----GGAc -5'
5697 5' -64.8 NC_001806.1 + 106668 0.66 0.556537
Target:  5'- gGGGaCCCCGcggacgaaaaccCCCCGGGGgcUCUUCCn- -3'
miRNA:   3'- -CCC-GGGGCa-----------GGGGCCCCa-GGAAGGac -5'
5697 5' -64.8 NC_001806.1 + 23527 0.66 0.5556
Target:  5'- aGGGCCCCGacccccugggcggcUggcggcggcagcCCCCGGGGcCCagCCa- -3'
miRNA:   3'- -CCCGGGGC--------------A------------GGGGCCCCaGGaaGGac -5'
5697 5' -64.8 NC_001806.1 + 31104 0.66 0.53974
Target:  5'- cGGGCCgCgGUCCCCGGcuGGagccgCCgcacCCUGc -3'
miRNA:   3'- -CCCGG-GgCAGGGGCC--CCa----GGaa--GGAC- -5'
5697 5' -64.8 NC_001806.1 + 23109 0.66 0.53974
Target:  5'- gGGGCCCUGggCCCCGcgcugccgcGGGaCCcgcgCCUGc -3'
miRNA:   3'- -CCCGGGGCa-GGGGC---------CCCaGGaa--GGAC- -5'
5697 5' -64.8 NC_001806.1 + 69960 0.66 0.521282
Target:  5'- cGGGCUUCGUCCCCuacGUUCUggcCCUGg -3'
miRNA:   3'- -CCCGGGGCAGGGGcccCAGGAa--GGAC- -5'
5697 5' -64.8 NC_001806.1 + 132512 0.66 0.512146
Target:  5'- gGGGCCCUGgcCCCCGucuuugCCUUUCUGg -3'
miRNA:   3'- -CCCGGGGCa-GGGGCccca--GGAAGGAC- -5'
5697 5' -64.8 NC_001806.1 + 20174 0.66 0.512146
Target:  5'- cGGG-CCCGcCCCCGGGG-CCggCg-- -3'
miRNA:   3'- -CCCgGGGCaGGGGCCCCaGGaaGgac -5'
5697 5' -64.8 NC_001806.1 + 105744 0.67 0.503076
Target:  5'- cGGGCCCCGUgggUUagggaCGGGGUCCc-CCa- -3'
miRNA:   3'- -CCCGGGGCA---GGg----GCCCCAGGaaGGac -5'
5697 5' -64.8 NC_001806.1 + 46077 0.67 0.494077
Target:  5'- cGGcGUCCCGUUUCCGGGGcgguuuugUCCggcccggggCCUGc -3'
miRNA:   3'- -CC-CGGGGCAGGGGCCCC--------AGGaa-------GGAC- -5'
5697 5' -64.8 NC_001806.1 + 12336 0.67 0.485152
Target:  5'- cGGGCCCCaaggCCCCGGcGUCCa----- -3'
miRNA:   3'- -CCCGGGGca--GGGGCCcCAGGaaggac -5'
5697 5' -64.8 NC_001806.1 + 147673 0.67 0.485152
Target:  5'- cGGCUCCG-CCCCGGGGgCCg----- -3'
miRNA:   3'- cCCGGGGCaGGGGCCCCaGGaaggac -5'
5697 5' -64.8 NC_001806.1 + 12924 0.67 0.476305
Target:  5'- aGGGCCgaaUCCUCGGGGU-CUUCCg- -3'
miRNA:   3'- -CCCGGggcAGGGGCCCCAgGAAGGac -5'
5697 5' -64.8 NC_001806.1 + 144822 0.67 0.476305
Target:  5'- gGGGcCCCCGaCCgCGGcGGUCCgggccccgUCCg- -3'
miRNA:   3'- -CCC-GGGGCaGGgGCC-CCAGGa-------AGGac -5'
5697 5' -64.8 NC_001806.1 + 150255 0.67 0.476305
Target:  5'- uGGCCUgcguCGgugCCCCGGGGcuucccgCCUUCCc- -3'
miRNA:   3'- cCCGGG----GCa--GGGGCCCCa------GGAAGGac -5'
5697 5' -64.8 NC_001806.1 + 72628 0.67 0.467538
Target:  5'- aGGGCCuCCGagacaUCCCGGGGgacggCCggUCCg- -3'
miRNA:   3'- -CCCGG-GGCa----GGGGCCCCa----GGa-AGGac -5'
5697 5' -64.8 NC_001806.1 + 3936 0.67 0.467538
Target:  5'- aGGCCUgguccagcgccaCGUCCCCGGGGaCCacgcgcgggUUCUGg -3'
miRNA:   3'- cCCGGG------------GCAGGGGCCCCaGGa--------AGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.