miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5701 5' -55.9 NC_001806.1 + 35542 0.66 0.915363
Target:  5'- gCCgCCCAGcGAGCCGcucGGCGcgcccGGCGcCGCg -3'
miRNA:   3'- aGG-GGGUC-CUUGGU---CCGU-----UUGCaGUG- -5'
5701 5' -55.9 NC_001806.1 + 83800 0.66 0.915363
Target:  5'- gCCUCCGGGGGCgAGGaggGGGCGgggucggCGCg -3'
miRNA:   3'- aGGGGGUCCUUGgUCCg--UUUGCa------GUG- -5'
5701 5' -55.9 NC_001806.1 + 99757 0.66 0.915363
Target:  5'- gCCUCCGGGGgacaaaggGCCGGGUggGuCGUUg- -3'
miRNA:   3'- aGGGGGUCCU--------UGGUCCGuuU-GCAGug -5'
5701 5' -55.9 NC_001806.1 + 41541 0.66 0.915363
Target:  5'- gUCCCgUGGGGACCAuggauauccGGUAGACGggCAg -3'
miRNA:   3'- -AGGGgGUCCUUGGU---------CCGUUUGCa-GUg -5'
5701 5' -55.9 NC_001806.1 + 64128 0.66 0.915363
Target:  5'- cUCgCCCCAGGGcgAUguGGCGcAUGcCGCg -3'
miRNA:   3'- -AG-GGGGUCCU--UGguCCGUuUGCaGUG- -5'
5701 5' -55.9 NC_001806.1 + 77243 0.66 0.915363
Target:  5'- aCCCUgGGGGGCCuguuGGCGGAauuCGaCGCg -3'
miRNA:   3'- aGGGGgUCCUUGGu---CCGUUU---GCaGUG- -5'
5701 5' -55.9 NC_001806.1 + 35101 0.66 0.909399
Target:  5'- aCCCCCGGGGuuAUaaaAGGC--GCGUCcCg -3'
miRNA:   3'- aGGGGGUCCU--UGg--UCCGuuUGCAGuG- -5'
5701 5' -55.9 NC_001806.1 + 147975 0.66 0.909399
Target:  5'- cCCCCCggAGGGGCCAGaCGccccccgcGGCGcCGCg -3'
miRNA:   3'- aGGGGG--UCCUUGGUCcGU--------UUGCaGUG- -5'
5701 5' -55.9 NC_001806.1 + 109941 0.66 0.909399
Target:  5'- cUCCCCGGGcuGCgAGGCAcACGgcCGCc -3'
miRNA:   3'- aGGGGGUCCu-UGgUCCGUuUGCa-GUG- -5'
5701 5' -55.9 NC_001806.1 + 99992 0.66 0.909399
Target:  5'- cUCCCCGGGGuaguaCGGGUAGuccGCGUC-Cg -3'
miRNA:   3'- aGGGGGUCCUug---GUCCGUU---UGCAGuG- -5'
5701 5' -55.9 NC_001806.1 + 130433 0.66 0.909399
Target:  5'- gCCCUCAGGGcCCAGcGCGAucuACGggaGCu -3'
miRNA:   3'- aGGGGGUCCUuGGUC-CGUU---UGCag-UG- -5'
5701 5' -55.9 NC_001806.1 + 81253 0.66 0.908789
Target:  5'- aCCCCagaAGGAAcuccCCGGGCcucacggggucccGGGCGUCGa -3'
miRNA:   3'- aGGGGg--UCCUU----GGUCCG-------------UUUGCAGUg -5'
5701 5' -55.9 NC_001806.1 + 56271 0.66 0.903196
Target:  5'- gUCCCCGGGGuccuuCCuGuGCAGGCGaCGCc -3'
miRNA:   3'- aGGGGGUCCUu----GGuC-CGUUUGCaGUG- -5'
5701 5' -55.9 NC_001806.1 + 97809 0.66 0.903196
Target:  5'- gCCCCCGccgcccGGGGCCAGcGCcaacGCGUC-Cg -3'
miRNA:   3'- aGGGGGU------CCUUGGUC-CGuu--UGCAGuG- -5'
5701 5' -55.9 NC_001806.1 + 119466 0.66 0.896757
Target:  5'- gCCaCCCGGuccgagcgcGGACCGGGCGugcggccuguGGCGUUGCa -3'
miRNA:   3'- aGG-GGGUC---------CUUGGUCCGU----------UUGCAGUG- -5'
5701 5' -55.9 NC_001806.1 + 41748 0.66 0.896757
Target:  5'- aCCCgCgGGGGACCAGGagcuuuucGGCGUC-Cg -3'
miRNA:   3'- aGGG-GgUCCUUGGUCCgu------UUGCAGuG- -5'
5701 5' -55.9 NC_001806.1 + 93599 0.66 0.896757
Target:  5'- -gCCCCGGGAccggcauuuGCCGGccGCAAACGggcguucCACg -3'
miRNA:   3'- agGGGGUCCU---------UGGUC--CGUUUGCa------GUG- -5'
5701 5' -55.9 NC_001806.1 + 57365 0.66 0.896757
Target:  5'- gUCCUCCGGGGACacggcccgguGGCuguCGUUGCg -3'
miRNA:   3'- -AGGGGGUCCUUGgu--------CCGuuuGCAGUG- -5'
5701 5' -55.9 NC_001806.1 + 7023 0.66 0.896757
Target:  5'- aCCCCCGGccccaguuGGGCCGGGCGacccaGAUGuUUACu -3'
miRNA:   3'- aGGGGGUC--------CUUGGUCCGU-----UUGC-AGUG- -5'
5701 5' -55.9 NC_001806.1 + 41356 0.66 0.896101
Target:  5'- cCCCCCGGcauCCAGGCcgccaggGGGCaUCACg -3'
miRNA:   3'- aGGGGGUCcuuGGUCCG-------UUUGcAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.