miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5708 3' -58.2 NC_001806.1 + 50890 0.66 0.831662
Target:  5'- uGGGCGGacuCCGCGCGGCCGcggagcacguggAUCUGCg -3'
miRNA:   3'- cUCUGCCcu-GGCGCGUUGGU------------UGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 57760 0.66 0.831662
Target:  5'- cGGGACGGG-CCGC-CGuCCcgUCCGCc -3'
miRNA:   3'- -CUCUGCCCuGGCGcGUuGGuuGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 66514 0.66 0.831662
Target:  5'- cGGGGuuugGGGAUUG-GCGGCCAgGCCCGCg -3'
miRNA:   3'- -CUCUg---CCCUGGCgCGUUGGU-UGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 23280 0.66 0.831662
Target:  5'- cGGGA-GGGGCgcaaGCGCAAgagucCCGGCCCGg -3'
miRNA:   3'- -CUCUgCCCUGg---CGCGUU-----GGUUGGGUg -5'
5708 3' -58.2 NC_001806.1 + 142022 0.66 0.831662
Target:  5'- aGGGCGGcGAggaGCGCcGCCGGCCCu- -3'
miRNA:   3'- cUCUGCC-CUgg-CGCGuUGGUUGGGug -5'
5708 3' -58.2 NC_001806.1 + 134000 0.66 0.831662
Target:  5'- cAGAUGGGA-CGCcauacaCAGCCAcccACCCACc -3'
miRNA:   3'- cUCUGCCCUgGCGc-----GUUGGU---UGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 85746 0.66 0.826686
Target:  5'- cGGucCGGaGCCGCGCGGCCAcgucguccgggggguGCCaCACu -3'
miRNA:   3'- cUCu-GCCcUGGCGCGUUGGU---------------UGG-GUG- -5'
5708 3' -58.2 NC_001806.1 + 80019 0.66 0.823334
Target:  5'- uAGGCGGG-CCGCaGCGgcGCCuuacgcgcCCCGCu -3'
miRNA:   3'- cUCUGCCCuGGCG-CGU--UGGuu------GGGUG- -5'
5708 3' -58.2 NC_001806.1 + 21976 0.66 0.823334
Target:  5'- -cGGCGGGucgagcuggacGCCGaCGCGACCu-CCgGCg -3'
miRNA:   3'- cuCUGCCC-----------UGGC-GCGUUGGuuGGgUG- -5'
5708 3' -58.2 NC_001806.1 + 2217 0.66 0.823334
Target:  5'- cAGGCGG--CCGUGU--CCGGCCCGCa -3'
miRNA:   3'- cUCUGCCcuGGCGCGuuGGUUGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 92321 0.66 0.823334
Target:  5'- gGGGGCGGcuauCUGCGCccCCAGCCUAa -3'
miRNA:   3'- -CUCUGCCcu--GGCGCGuuGGUUGGGUg -5'
5708 3' -58.2 NC_001806.1 + 83670 0.66 0.823334
Target:  5'- -cGGCGGGGugcCCGgGCGGCauGCCCAg -3'
miRNA:   3'- cuCUGCCCU---GGCgCGUUGguUGGGUg -5'
5708 3' -58.2 NC_001806.1 + 109082 0.66 0.823334
Target:  5'- --cGCGGGGCCcccGCGgAGCCAAacaguuUCCACg -3'
miRNA:   3'- cucUGCCCUGG---CGCgUUGGUU------GGGUG- -5'
5708 3' -58.2 NC_001806.1 + 52717 0.66 0.823334
Target:  5'- gGAGGCGccgcgcGGACgGCGCGggGCC--CCCGCu -3'
miRNA:   3'- -CUCUGC------CCUGgCGCGU--UGGuuGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 3440 0.66 0.822492
Target:  5'- cAGGCGGccaggcacucgacGGCCaCGCGGCCGGCCUggGCg -3'
miRNA:   3'- cUCUGCC-------------CUGGcGCGUUGGUUGGG--UG- -5'
5708 3' -58.2 NC_001806.1 + 132352 0.66 0.822492
Target:  5'- cGAGGUGGG-CC-UGCGGCCAcgcgggcACCCGCa -3'
miRNA:   3'- -CUCUGCCCuGGcGCGUUGGU-------UGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 33778 0.66 0.820802
Target:  5'- --uGCGGcGGCCGCcguguucggucucgGUAGCCGGCCgGCg -3'
miRNA:   3'- cucUGCC-CUGGCG--------------CGUUGGUUGGgUG- -5'
5708 3' -58.2 NC_001806.1 + 55091 0.66 0.815694
Target:  5'- aGAGACGGGGggcggaacaugcggaCGCGCAcCCAcguCCCGu -3'
miRNA:   3'- -CUCUGCCCUg--------------GCGCGUuGGUu--GGGUg -5'
5708 3' -58.2 NC_001806.1 + 34521 0.66 0.814837
Target:  5'- gGGGGUGGGAgCGCG-GGCCGGgCCGCu -3'
miRNA:   3'- -CUCUGCCCUgGCGCgUUGGUUgGGUG- -5'
5708 3' -58.2 NC_001806.1 + 64810 0.66 0.814837
Target:  5'- gGGGACGGGguagGCCGUGC--CCGuuCCCAg -3'
miRNA:   3'- -CUCUGCCC----UGGCGCGuuGGUu-GGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.