miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5719 3' -55 NC_001806.1 + 32823 0.65 0.95087
Target:  5'- aCGGGGgaggaagggaGgGAggagGGUaCUGGGGGUg -3'
miRNA:   3'- gGUCCCaa--------CgCUaa--CCAaGACCCCCG- -5'
5719 3' -55 NC_001806.1 + 146780 0.65 0.95087
Target:  5'- gCGGGGgc-CGucgGGUacUCgGGGGGCa -3'
miRNA:   3'- gGUCCCaacGCuaaCCA--AGaCCCCCG- -5'
5719 3' -55 NC_001806.1 + 147389 0.65 0.95087
Target:  5'- -aGGGGggGaCGcgUGGa-CUGGGGGg -3'
miRNA:   3'- ggUCCCaaC-GCuaACCaaGACCCCCg -5'
5719 3' -55 NC_001806.1 + 76554 0.66 0.948357
Target:  5'- gCGGGGcUGCGGgaGGUgCUGGccgcgcgcgagcgccGGGCc -3'
miRNA:   3'- gGUCCCaACGCUaaCCAaGACC---------------CCCG- -5'
5719 3' -55 NC_001806.1 + 18502 0.66 0.946635
Target:  5'- gCCAGGGcUGgGAgcccucCUGGGGGg -3'
miRNA:   3'- -GGUCCCaACgCUaaccaaGACCCCCg -5'
5719 3' -55 NC_001806.1 + 32021 0.66 0.942166
Target:  5'- -gGGGGUgggGCGGaggGGUgggGGGGGg -3'
miRNA:   3'- ggUCCCAa--CGCUaa-CCAagaCCCCCg -5'
5719 3' -55 NC_001806.1 + 37791 0.66 0.942166
Target:  5'- gCCGGGGc-GCGgg-GGUccgCgggcggGGGGGCa -3'
miRNA:   3'- -GGUCCCaaCGCuaaCCAa--Ga-----CCCCCG- -5'
5719 3' -55 NC_001806.1 + 45328 0.66 0.942166
Target:  5'- -gGGcGGgcGCGAUgGGaUC-GGGGGCg -3'
miRNA:   3'- ggUC-CCaaCGCUAaCCaAGaCCCCCG- -5'
5719 3' -55 NC_001806.1 + 34761 0.66 0.942166
Target:  5'- -gGGGGgcaaagccgGCGGggcGGUUCgGGGGGg -3'
miRNA:   3'- ggUCCCaa-------CGCUaa-CCAAGaCCCCCg -5'
5719 3' -55 NC_001806.1 + 124086 0.66 0.942166
Target:  5'- cCCGGGGcc-CGAagcuucgGGgggUCUGGGGGa -3'
miRNA:   3'- -GGUCCCaacGCUaa-----CCa--AGACCCCCg -5'
5719 3' -55 NC_001806.1 + 105101 0.66 0.939371
Target:  5'- gCAGGGcgGCGGgucguggcgggaggaUUGGggacagCUuucGGGGGCg -3'
miRNA:   3'- gGUCCCaaCGCU---------------AACCaa----GA---CCCCCG- -5'
5719 3' -55 NC_001806.1 + 80594 0.66 0.937461
Target:  5'- cCCGGGGaguauccgGCGGUUcGGUUCc--GGGCa -3'
miRNA:   3'- -GGUCCCaa------CGCUAA-CCAAGaccCCCG- -5'
5719 3' -55 NC_001806.1 + 77135 0.66 0.937461
Target:  5'- gCCGGGGccGUGGagGaGcUCgGGGGGCg -3'
miRNA:   3'- -GGUCCCaaCGCUaaC-CaAGaCCCCCG- -5'
5719 3' -55 NC_001806.1 + 43703 0.66 0.937461
Target:  5'- uUCGGGGUUGCcGggGGaacccggUCgGGGGGg -3'
miRNA:   3'- -GGUCCCAACGcUaaCCa------AGaCCCCCg -5'
5719 3' -55 NC_001806.1 + 18936 0.66 0.932518
Target:  5'- aUCAGGuGgcgcagGCGGUUGGcacugCgUGGGGGUc -3'
miRNA:   3'- -GGUCC-Caa----CGCUAACCaa---G-ACCCCCG- -5'
5719 3' -55 NC_001806.1 + 117172 0.66 0.932518
Target:  5'- --uGGGUUGgGGUuucUGuGUUCacagGGGGGUg -3'
miRNA:   3'- gguCCCAACgCUA---AC-CAAGa---CCCCCG- -5'
5719 3' -55 NC_001806.1 + 99636 0.66 0.932518
Target:  5'- aCAuGGggGCGGUggcGGgcCUGGcGGGCa -3'
miRNA:   3'- gGUcCCaaCGCUAa--CCaaGACC-CCCG- -5'
5719 3' -55 NC_001806.1 + 62770 0.66 0.932518
Target:  5'- uCCcGGGUcaccuUGCugaacaGGUUGGUgaacagGGGGGCa -3'
miRNA:   3'- -GGuCCCA-----ACG------CUAACCAaga---CCCCCG- -5'
5719 3' -55 NC_001806.1 + 44169 0.66 0.927336
Target:  5'- aCCAGGa--GCGGcgGGUUCcUGGGuucGGCg -3'
miRNA:   3'- -GGUCCcaaCGCUaaCCAAG-ACCC---CCG- -5'
5719 3' -55 NC_001806.1 + 33993 0.66 0.927336
Target:  5'- gCCGGGGcagggGCGGgggcgUGGgc--GGGGGUg -3'
miRNA:   3'- -GGUCCCaa---CGCUa----ACCaagaCCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.