miRNA display CGI


Results 1 - 20 of 178 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5719 5' -56.5 NC_001806.1 + 56679 0.66 0.91885
Target:  5'- gGGGGUCgGGgGGGa---CGGgGGCCCg -3'
miRNA:   3'- -CCCCAGgCUgUUUgguaGCCgUCGGG- -5'
5719 5' -56.5 NC_001806.1 + 46888 0.66 0.91885
Target:  5'- gGGGGgaagUC-ACGAGgUAggGGCGGCCCg -3'
miRNA:   3'- -CCCCa---GGcUGUUUgGUagCCGUCGGG- -5'
5719 5' -56.5 NC_001806.1 + 100097 0.66 0.91885
Target:  5'- aGGGUcucccgcggCCGGCuGACCGcccgccUGGCGGUCCg -3'
miRNA:   3'- cCCCA---------GGCUGuUUGGUa-----GCCGUCGGG- -5'
5719 5' -56.5 NC_001806.1 + 103784 0.66 0.91885
Target:  5'- -cGGUCUGcuGCAGACCcccgGGCGGCgCCg -3'
miRNA:   3'- ccCCAGGC--UGUUUGGuag-CCGUCG-GG- -5'
5719 5' -56.5 NC_001806.1 + 86387 0.66 0.91885
Target:  5'- cGGGGcgCuCGGCuAACg--CGGCGGCCg -3'
miRNA:   3'- -CCCCa-G-GCUGuUUGguaGCCGUCGGg -5'
5719 5' -56.5 NC_001806.1 + 24229 0.66 0.91885
Target:  5'- cGGGcCCG-CGGugUcgCGGCAGCa- -3'
miRNA:   3'- cCCCaGGCuGUUugGuaGCCGUCGgg -5'
5719 5' -56.5 NC_001806.1 + 56829 0.66 0.91829
Target:  5'- cGGGcCCGcCAAcaccgccgcgGCCAgggCGGCcgcggcgGGCCCa -3'
miRNA:   3'- cCCCaGGCuGUU----------UGGUa--GCCG-------UCGGG- -5'
5719 5' -56.5 NC_001806.1 + 58207 0.66 0.913147
Target:  5'- gGGGGUCgUGAggaaGAACUugaGGguGCCCc -3'
miRNA:   3'- -CCCCAG-GCUg---UUUGGuagCCguCGGG- -5'
5719 5' -56.5 NC_001806.1 + 2191 0.66 0.913147
Target:  5'- cGGGGgcgCCGGucCAAuuGCCcgCccaGGCGGCCg -3'
miRNA:   3'- -CCCCa--GGCU--GUU--UGGuaG---CCGUCGGg -5'
5719 5' -56.5 NC_001806.1 + 119292 0.66 0.913147
Target:  5'- cGGGGgcgCCcGCAGACCcgcccaucGUCGGgGcGUCCg -3'
miRNA:   3'- -CCCCa--GGcUGUUUGG--------UAGCCgU-CGGG- -5'
5719 5' -56.5 NC_001806.1 + 2874 0.66 0.913147
Target:  5'- cGGGcGUCCGA---GCCGggGGC-GUCCg -3'
miRNA:   3'- -CCC-CAGGCUguuUGGUagCCGuCGGG- -5'
5719 5' -56.5 NC_001806.1 + 131979 0.66 0.913147
Target:  5'- -uGGagCGcCAGACCGggcCGGUGGCCCu -3'
miRNA:   3'- ccCCagGCuGUUUGGUa--GCCGUCGGG- -5'
5719 5' -56.5 NC_001806.1 + 30656 0.66 0.909614
Target:  5'- aGGGUgggcccgggacccccCUGACGu-CC-UCGGCGGCCUc -3'
miRNA:   3'- cCCCA---------------GGCUGUuuGGuAGCCGUCGGG- -5'
5719 5' -56.5 NC_001806.1 + 74342 0.66 0.909614
Target:  5'- cGGGG-CCaGACGcuggacgcccccgagGACC--UGGCGGCCUg -3'
miRNA:   3'- -CCCCaGG-CUGU---------------UUGGuaGCCGUCGGG- -5'
5719 5' -56.5 NC_001806.1 + 3149 0.66 0.907817
Target:  5'- aGGGccCCGGC-GACCAggcucacggcgcgcaCGGCGGCCa -3'
miRNA:   3'- cCCCa-GGCUGuUUGGUa--------------GCCGUCGGg -5'
5719 5' -56.5 NC_001806.1 + 3836 0.66 0.907213
Target:  5'- -cGG-CCGGCc-GCCAUgGcGUAGCCCa -3'
miRNA:   3'- ccCCaGGCUGuuUGGUAgC-CGUCGGG- -5'
5719 5' -56.5 NC_001806.1 + 99651 0.66 0.907213
Target:  5'- cGGGcCUGGCGGGCa---GGCAGCUg -3'
miRNA:   3'- cCCCaGGCUGUUUGguagCCGUCGGg -5'
5719 5' -56.5 NC_001806.1 + 131860 0.66 0.907213
Target:  5'- ---cUCCGucCAGGCCGUCguGGCGGCCg -3'
miRNA:   3'- ccccAGGCu-GUUUGGUAG--CCGUCGGg -5'
5719 5' -56.5 NC_001806.1 + 135293 0.66 0.907213
Target:  5'- aGGGGg-CGACGAAUg--CGGCGaucGCCCc -3'
miRNA:   3'- -CCCCagGCUGUUUGguaGCCGU---CGGG- -5'
5719 5' -56.5 NC_001806.1 + 120337 0.66 0.907213
Target:  5'- cGGGGg-CGGCGggUCGucccgcUCGGCgacgaccucccGGCCCg -3'
miRNA:   3'- -CCCCagGCUGUuuGGU------AGCCG-----------UCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.