Results 1 - 20 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5727 | 5' | -69.9 | NC_001806.1 | + | 96516 | 0.66 | 0.367284 |
Target: 5'- gGGGGCCCugccacucCGGcGCCGcccGCCCCUggcgcccccccaacgGGGg -3' miRNA: 3'- -CCCCGGG--------GCC-CGGCcc-CGGGGAa--------------CCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 126854 | 0.66 | 0.366556 |
Target: 5'- aGGGcguaacguuccGCCUggaggaCGGcGCCGGGGCUCUcgGGGc -3' miRNA: 3'- -CCC-----------CGGG------GCC-CGGCCCCGGGGaaCCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 65450 | 0.66 | 0.366556 |
Target: 5'- cGGGGgaugccgcggcCCCCGGGUCcugGGGGCgCCCg---- -3' miRNA: 3'- -CCCC-----------GGGGCCCGG---CCCCG-GGGaaccc -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 146188 | 0.66 | 0.366556 |
Target: 5'- -aGGCagCCCGGGCCGcGGCUCUgUGGu -3' miRNA: 3'- ccCCG--GGGCCCGGCcCCGGGGaACCc -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 21776 | 0.66 | 0.366556 |
Target: 5'- cGGGGUCCgucgagcgCGGcGCCGGcaGCCCCc-GGGc -3' miRNA: 3'- -CCCCGGG--------GCC-CGGCCc-CGGGGaaCCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 6072 | 0.66 | 0.366556 |
Target: 5'- -cGGCCCCGGGggcGGGCCCgggcggcgGGGg -3' miRNA: 3'- ccCCGGGGCCCggcCCCGGGgaa-----CCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 18484 | 0.66 | 0.364379 |
Target: 5'- -cGGCCacgaccgcagacagCCaGGGCUGGGaGCCCUccUGGGg -3' miRNA: 3'- ccCCGG--------------GG-CCCGGCCC-CGGGGa-ACCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 28396 | 0.66 | 0.364379 |
Target: 5'- gGGGGUgcggaacccccugaCCCuauauauacaGGGaCCGGGGUcgCCCUguUGGGg -3' miRNA: 3'- -CCCCG--------------GGG----------CCC-GGCCCCG--GGGA--ACCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 34280 | 0.66 | 0.359332 |
Target: 5'- uGGGGUCCCGGGggcgggaUGGGGUUUagcggcgGGGg -3' miRNA: 3'- -CCCCGGGGCCCg------GCCCCGGGgaa----CCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 143117 | 0.66 | 0.359332 |
Target: 5'- gGGGGCguggcugCCGGGa-GGGGCCgCggaUGGGc -3' miRNA: 3'- -CCCCGg------GGCCCggCCCCGGgGa--ACCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 36668 | 0.66 | 0.359332 |
Target: 5'- gGGGGCCacgUGGGuuauguCCGGGGCCCgUaagaacagguUGGu -3' miRNA: 3'- -CCCCGGg--GCCC------GGCCCCGGGgA----------ACCc -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 31098 | 0.66 | 0.359332 |
Target: 5'- -cGGCUgCGGGCCGcGGuCCCCggcUGGa -3' miRNA: 3'- ccCCGGgGCCCGGCcCC-GGGGa--ACCc -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 113158 | 0.66 | 0.352209 |
Target: 5'- -uGGCCCaCGGGC--GGGUCCgaUGGGu -3' miRNA: 3'- ccCCGGG-GCCCGgcCCCGGGgaACCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 30035 | 0.66 | 0.352209 |
Target: 5'- cGGGGCggCCgagGGGCCGgacGGGCcCCCUUGu- -3' miRNA: 3'- -CCCCG--GGg--CCCGGC---CCCG-GGGAACcc -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 13604 | 0.66 | 0.352209 |
Target: 5'- gGGGGCUggaaCGGGuCCGGuaGGCCCgCcUGGa -3' miRNA: 3'- -CCCCGGg---GCCC-GGCC--CCGGG-GaACCc -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 55542 | 0.66 | 0.351502 |
Target: 5'- uGGGGCggCCCGacuuGGCgGGGGUgguguugUUCUUGGGu -3' miRNA: 3'- -CCCCG--GGGC----CCGgCCCCG-------GGGAACCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 93889 | 0.66 | 0.345185 |
Target: 5'- cGGGCCCgCGGGa-GGccGCCCCgaagagGGGg -3' miRNA: 3'- cCCCGGG-GCCCggCCc-CGGGGaa----CCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 4821 | 0.66 | 0.345185 |
Target: 5'- gGGGGUCCgGGGCgGcGaGGCCgCg-GGGu -3' miRNA: 3'- -CCCCGGGgCCCGgC-C-CCGGgGaaCCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 15847 | 0.66 | 0.345185 |
Target: 5'- cGGGCCCCuu-UUGGGGCCgCggGGGg -3' miRNA: 3'- cCCCGGGGcccGGCCCCGGgGaaCCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 56621 | 0.66 | 0.344488 |
Target: 5'- cGGGCCgcgcgacccuggCCGGugcgaccucaucgGCCGGcGGCCCg-UGGGa -3' miRNA: 3'- cCCCGG------------GGCC-------------CGGCC-CCGGGgaACCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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