miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5731 5' -63.9 NC_001806.1 + 108622 0.66 0.615855
Target:  5'- aGGUcaccCCUGUCAGcCGCGcggugugcguGGCUGCGGa -3'
miRNA:   3'- gCCGa---GGGCGGUCaGCGC----------UCGGCGCC- -5'
5731 5' -63.9 NC_001806.1 + 30208 0.66 0.615855
Target:  5'- uCGGgaCCCGCgCGccccCGCGcGGCCGUGGc -3'
miRNA:   3'- -GCCgaGGGCG-GUca--GCGC-UCGGCGCC- -5'
5731 5' -63.9 NC_001806.1 + 10121 0.66 0.615855
Target:  5'- aCGGCgcgUCgGCCGGggacagacauUCuGgGAGCUGCGGg -3'
miRNA:   3'- -GCCGa--GGgCGGUC----------AG-CgCUCGGCGCC- -5'
5731 5' -63.9 NC_001806.1 + 74609 0.66 0.615855
Target:  5'- gGGCUgUCGCCAGaggccaCGCGcauGGCCGaGGa -3'
miRNA:   3'- gCCGAgGGCGGUCa-----GCGC---UCGGCgCC- -5'
5731 5' -63.9 NC_001806.1 + 63775 0.66 0.614897
Target:  5'- aCGGCUCCagguacacgcacgCGCCGGUCG-GAcGCgCGCu- -3'
miRNA:   3'- -GCCGAGG-------------GCGGUCAGCgCU-CG-GCGcc -5'
5731 5' -63.9 NC_001806.1 + 21585 0.66 0.606275
Target:  5'- -cGCgCCCGCCGGcccaGCc-GCCGCGGa -3'
miRNA:   3'- gcCGaGGGCGGUCag--CGcuCGGCGCC- -5'
5731 5' -63.9 NC_001806.1 + 23253 0.66 0.606275
Target:  5'- gCGGC-CgCCGCCGccucCGcCGcGCCGCGGg -3'
miRNA:   3'- -GCCGaG-GGCGGUca--GC-GCuCGGCGCC- -5'
5731 5' -63.9 NC_001806.1 + 5059 0.66 0.606275
Target:  5'- gGGCccCCCGCUcGUCGCGgucugGGCuCGgGGu -3'
miRNA:   3'- gCCGa-GGGCGGuCAGCGC-----UCG-GCgCC- -5'
5731 5' -63.9 NC_001806.1 + 26680 0.66 0.596711
Target:  5'- cCGGC-CCCGgcccccaccgcCCGG-CGUGGGCC-CGGg -3'
miRNA:   3'- -GCCGaGGGC-----------GGUCaGCGCUCGGcGCC- -5'
5731 5' -63.9 NC_001806.1 + 147170 0.66 0.596711
Target:  5'- aCGGC-CCCGCCcgaGGagGCG-GaaGCGGa -3'
miRNA:   3'- -GCCGaGGGCGG---UCagCGCuCggCGCC- -5'
5731 5' -63.9 NC_001806.1 + 21926 0.66 0.596711
Target:  5'- gCGGCggUgGCCGGcCGCGAcGCCaCGGg -3'
miRNA:   3'- -GCCGagGgCGGUCaGCGCU-CGGcGCC- -5'
5731 5' -63.9 NC_001806.1 + 151342 0.66 0.593846
Target:  5'- gGGCugUCCgGCCAGUCGuCGucaucgucgucgucGGaCGCGGa -3'
miRNA:   3'- gCCG--AGGgCGGUCAGC-GC--------------UCgGCGCC- -5'
5731 5' -63.9 NC_001806.1 + 2890 0.66 0.592891
Target:  5'- gGGCgUCCgCGCCGcucuucuucgucuUCGgGGGUCGCGGg -3'
miRNA:   3'- gCCG-AGG-GCGGUc------------AGCgCUCGGCGCC- -5'
5731 5' -63.9 NC_001806.1 + 109392 0.66 0.590983
Target:  5'- cCGaC-CCCGCCcccgacccggcgaugGGUCGUGGGgCGCGGc -3'
miRNA:   3'- -GCcGaGGGCGG---------------UCAGCGCUCgGCGCC- -5'
5731 5' -63.9 NC_001806.1 + 120682 0.66 0.58717
Target:  5'- uCGGaC-CCCGUCg--CGCGGGCCGCu- -3'
miRNA:   3'- -GCC-GaGGGCGGucaGCGCUCGGCGcc -5'
5731 5' -63.9 NC_001806.1 + 125849 0.66 0.58717
Target:  5'- gGGCcCCCgGCC-GcCGCGGacGCCGUGGc -3'
miRNA:   3'- gCCGaGGG-CGGuCaGCGCU--CGGCGCC- -5'
5731 5' -63.9 NC_001806.1 + 5401 0.66 0.586217
Target:  5'- uGGCggUCCCGCgucgGGUCGUGgauccgugucggcAGCCGCGc -3'
miRNA:   3'- gCCG--AGGGCGg---UCAGCGC-------------UCGGCGCc -5'
5731 5' -63.9 NC_001806.1 + 21740 0.66 0.577657
Target:  5'- gCGGCcgaCCaCGCacgcgaGG-CGCGGGCCGuCGGg -3'
miRNA:   3'- -GCCGa--GG-GCGg-----UCaGCGCUCGGC-GCC- -5'
5731 5' -63.9 NC_001806.1 + 88958 0.66 0.576708
Target:  5'- gGGCguggUCCaCGCCgccccacAGgCGCGAgcGCCGCGGc -3'
miRNA:   3'- gCCG----AGG-GCGG-------UCaGCGCU--CGGCGCC- -5'
5731 5' -63.9 NC_001806.1 + 9759 0.66 0.568179
Target:  5'- gGGCg-CCGUgGGUUGgGGGCgCGUGGg -3'
miRNA:   3'- gCCGagGGCGgUCAGCgCUCG-GCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.