miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5732 3' -59.7 NC_001806.1 + 66817 0.66 0.778429
Target:  5'- cGAGcGGGGCcggcccggGUGGCCggugUGCGCCgCCu -3'
miRNA:   3'- -CUC-CCCCG--------CAUUGGacuaGCGCGG-GG- -5'
5732 3' -59.7 NC_001806.1 + 10704 0.66 0.778429
Target:  5'- cGGGGGGGCGUAcGCC--AUCGCcaGCgggaCCg -3'
miRNA:   3'- -CUCCCCCGCAU-UGGacUAGCG--CGg---GG- -5'
5732 3' -59.7 NC_001806.1 + 147684 0.66 0.769333
Target:  5'- -cGGGGGCcggGGCgCggGggCGgGCCCCg -3'
miRNA:   3'- cuCCCCCGca-UUG-Ga-CuaGCgCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 27766 0.66 0.769333
Target:  5'- -uGGGGGac--ACCgGGUUGgGCCCCc -3'
miRNA:   3'- cuCCCCCgcauUGGaCUAGCgCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 59177 0.66 0.76382
Target:  5'- gGAGGGGGCGUAugccGCUgcgagggugggguuuUGAUgGCaGCCa- -3'
miRNA:   3'- -CUCCCCCGCAU----UGG---------------ACUAgCG-CGGgg -5'
5732 3' -59.7 NC_001806.1 + 30263 0.66 0.760122
Target:  5'- --cGGGGCccGGCCcc--CGCGCCCCg -3'
miRNA:   3'- cucCCCCGcaUUGGacuaGCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 80248 0.66 0.750804
Target:  5'- gGAGGGcGGUGUugcgcccggaGGCCcGGUuuccCGcCGCCCCa -3'
miRNA:   3'- -CUCCC-CCGCA----------UUGGaCUA----GC-GCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 4828 0.66 0.750804
Target:  5'- cGGGGcGGCGaGGCCgcggGGUCGgGCgUCg -3'
miRNA:   3'- cUCCC-CCGCaUUGGa---CUAGCgCGgGG- -5'
5732 3' -59.7 NC_001806.1 + 147408 0.66 0.750804
Target:  5'- gGGGGGaGGgGUuuuCCUGGcccgaccCGCGCCUCu -3'
miRNA:   3'- -CUCCC-CCgCAuu-GGACUa------GCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 2764 0.66 0.750804
Target:  5'- -cGGGGcGCGggcgGGCCUGcgCcgcgGCGgCCCg -3'
miRNA:   3'- cuCCCC-CGCa---UUGGACuaG----CGCgGGG- -5'
5732 3' -59.7 NC_001806.1 + 128987 0.66 0.750804
Target:  5'- cGGGGGGGauuUGGCCgaauggGUGCCCCg -3'
miRNA:   3'- -CUCCCCCgc-AUUGGacuag-CGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 2815 0.66 0.750804
Target:  5'- -cGGGGGCGg-----GcUCGgGCCCCg -3'
miRNA:   3'- cuCCCCCGCauuggaCuAGCgCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 34797 0.66 0.749867
Target:  5'- gGGGGGGGCGggaAACCaaGUaggcccgcccaucCGCGgCCCCu -3'
miRNA:   3'- -CUCCCCCGCa--UUGGacUA-------------GCGC-GGGG- -5'
5732 3' -59.7 NC_001806.1 + 122786 0.66 0.745165
Target:  5'- -cGGGGGCcaggaauuccagcuUGGCCgugUGGUCGC-CCCCg -3'
miRNA:   3'- cuCCCCCGc-------------AUUGG---ACUAGCGcGGGG- -5'
5732 3' -59.7 NC_001806.1 + 80019 0.66 0.741387
Target:  5'- uAGGcGGGCcgcagcGgcGCCUua-CGCGCCCCg -3'
miRNA:   3'- cUCC-CCCG------CauUGGAcuaGCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 28612 0.66 0.741387
Target:  5'- -uGGGGGCGUGGuccccaCUGAcucauaCGCagGCCCCc -3'
miRNA:   3'- cuCCCCCGCAUUg-----GACUa-----GCG--CGGGG- -5'
5732 3' -59.7 NC_001806.1 + 76150 0.66 0.741387
Target:  5'- uGGGGGGCGU-GCCggcccUGCGCCa- -3'
miRNA:   3'- cUCCCCCGCAuUGGacua-GCGCGGgg -5'
5732 3' -59.7 NC_001806.1 + 20995 0.67 0.73188
Target:  5'- -cGGGGGuCGUcgggguCCgugGGUCuCGCCCCc -3'
miRNA:   3'- cuCCCCC-GCAuu----GGa--CUAGcGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 37923 0.67 0.73188
Target:  5'- -uGGGGGCGccggGGCCguccGUCcacccCGCCCCg -3'
miRNA:   3'- cuCCCCCGCa---UUGGac--UAGc----GCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 90537 0.67 0.730925
Target:  5'- cGGGGGaGGCGcUGugugagcgccucgGCCUGGacccggacCGCGCCCUc -3'
miRNA:   3'- -CUCCC-CCGC-AU-------------UGGACUa-------GCGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.