miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5736 3' -56.4 NC_001806.1 + 64561 0.66 0.887076
Target:  5'- cAUGUAUGCGuucggcGGGACCGGaGgaacguccagacacaGGCGCUg -3'
miRNA:   3'- aUAUAUAUGU------CCCUGGCC-C---------------CCGCGGu -5'
5736 3' -56.4 NC_001806.1 + 119552 0.66 0.884293
Target:  5'- ------aGCGGGGGCgccaUGGGGGCGgCu -3'
miRNA:   3'- auauauaUGUCCCUG----GCCCCCGCgGu -5'
5736 3' -56.4 NC_001806.1 + 147486 0.66 0.884293
Target:  5'- --------aGGGGAgCGGGGcgGCGCCGg -3'
miRNA:   3'- auauauaugUCCCUgGCCCC--CGCGGU- -5'
5736 3' -56.4 NC_001806.1 + 110911 0.66 0.884293
Target:  5'- cAUGUAuUACGGGcuGACCGGaagggugguGGCGCCGg -3'
miRNA:   3'- aUAUAU-AUGUCC--CUGGCCc--------CCGCGGU- -5'
5736 3' -56.4 NC_001806.1 + 9755 0.66 0.883592
Target:  5'- ------cGCAGGGcGCCguggguuGGGGGCGCg- -3'
miRNA:   3'- auauauaUGUCCC-UGG-------CCCCCGCGgu -5'
5736 3' -56.4 NC_001806.1 + 65443 0.66 0.877177
Target:  5'- --------aAGGGAgCGGGGGaUGCCGc -3'
miRNA:   3'- auauauaugUCCCUgGCCCCC-GCGGU- -5'
5736 3' -56.4 NC_001806.1 + 44841 0.66 0.877177
Target:  5'- ------cGCAGGGucCCGGGGGCa--- -3'
miRNA:   3'- auauauaUGUCCCu-GGCCCCCGcggu -5'
5736 3' -56.4 NC_001806.1 + 6776 0.66 0.877177
Target:  5'- ------gGCGuGaGGACCGGGaGGCgGCCAg -3'
miRNA:   3'- auauauaUGU-C-CCUGGCCC-CCG-CGGU- -5'
5736 3' -56.4 NC_001806.1 + 148155 0.66 0.869838
Target:  5'- ------cACGGGGGgCGcGGcGGCGCCu -3'
miRNA:   3'- auauauaUGUCCCUgGC-CC-CCGCGGu -5'
5736 3' -56.4 NC_001806.1 + 57643 0.66 0.869838
Target:  5'- ----cAUACGGGGuuUGGGGGCcCCc -3'
miRNA:   3'- auauaUAUGUCCCugGCCCCCGcGGu -5'
5736 3' -56.4 NC_001806.1 + 102948 0.66 0.869838
Target:  5'- ------gACGGccaGAcCCGGGGGCGCCc -3'
miRNA:   3'- auauauaUGUCc--CU-GGCCCCCGCGGu -5'
5736 3' -56.4 NC_001806.1 + 44791 0.66 0.862283
Target:  5'- ------cGguGaGGGCCGGGGGgguCGCCAg -3'
miRNA:   3'- auauauaUguC-CCUGGCCCCC---GCGGU- -5'
5736 3' -56.4 NC_001806.1 + 26996 0.66 0.862283
Target:  5'- ------aGCGGGccGACCGGGcucgguuccGGCGCCGg -3'
miRNA:   3'- auauauaUGUCC--CUGGCCC---------CCGCGGU- -5'
5736 3' -56.4 NC_001806.1 + 4660 0.66 0.862283
Target:  5'- ------gGCGGcuGGGCCGGcGGGCGCg- -3'
miRNA:   3'- auauauaUGUC--CCUGGCC-CCCGCGgu -5'
5736 3' -56.4 NC_001806.1 + 143264 0.66 0.862283
Target:  5'- gAUGUGgGCGGGGguGCgCGGGaGGUGUCGg -3'
miRNA:   3'- aUAUAUaUGUCCC--UG-GCCC-CCGCGGU- -5'
5736 3' -56.4 NC_001806.1 + 42318 0.66 0.862283
Target:  5'- --gGUGU-CGGGG-CgGGGGGCGUgGg -3'
miRNA:   3'- auaUAUAuGUCCCuGgCCCCCGCGgU- -5'
5736 3' -56.4 NC_001806.1 + 4181 0.66 0.854516
Target:  5'- -------cCGGGGGCgGGGGcccgGCGCCGg -3'
miRNA:   3'- auauauauGUCCCUGgCCCC----CGCGGU- -5'
5736 3' -56.4 NC_001806.1 + 22045 0.66 0.854516
Target:  5'- ------aGCGGGGAgCCGuGGcccGGCGCCGg -3'
miRNA:   3'- auauauaUGUCCCU-GGC-CC---CCGCGGU- -5'
5736 3' -56.4 NC_001806.1 + 2786 0.66 0.854516
Target:  5'- ------cGCGGcGGCCcGGGGCGCCGc -3'
miRNA:   3'- auauauaUGUCcCUGGcCCCCGCGGU- -5'
5736 3' -56.4 NC_001806.1 + 2872 0.67 0.846544
Target:  5'- ------cGCGGGcGuccgaGCCGGGGGCGuCCGc -3'
miRNA:   3'- auauauaUGUCC-C-----UGGCCCCCGC-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.