miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5737 5' -58.7 NC_001806.1 + 4944 0.66 0.812891
Target:  5'- gUCGgugcccgcCGCGGGGgcccucccgucccGCCGGGCGUCGUc -3'
miRNA:   3'- gAGUau------GUGCCCU-------------CGGCCCGCGGUAc -5'
5737 5' -58.7 NC_001806.1 + 128905 0.66 0.8051
Target:  5'- aUCcu-CugGGG-GCCGGGCGUCc-- -3'
miRNA:   3'- gAGuauGugCCCuCGGCCCGCGGuac -5'
5737 5' -58.7 NC_001806.1 + 74749 0.66 0.8051
Target:  5'- gCUCGagggaGCGCGGGAG-CGGGCGaagGUGg -3'
miRNA:   3'- -GAGUa----UGUGCCCUCgGCCCGCgg-UAC- -5'
5737 5' -58.7 NC_001806.1 + 46103 0.66 0.8051
Target:  5'- gUCcgGCcCGGGGccuGCgCGGGCGCCu-- -3'
miRNA:   3'- gAGuaUGuGCCCU---CG-GCCCGCGGuac -5'
5737 5' -58.7 NC_001806.1 + 96370 0.66 0.8051
Target:  5'- -cCAUGCGCcaGGGcGCCcccgcgcggGGGCGCCGg- -3'
miRNA:   3'- gaGUAUGUG--CCCuCGG---------CCCGCGGUac -5'
5737 5' -58.7 NC_001806.1 + 14047 0.66 0.7963
Target:  5'- aUCuuUAUugGGG-GCCGGG-GCCAc- -3'
miRNA:   3'- gAGu-AUGugCCCuCGGCCCgCGGUac -5'
5737 5' -58.7 NC_001806.1 + 31373 0.66 0.7963
Target:  5'- ----gAgGgGGGGGUCGGGCGCUggGUGg -3'
miRNA:   3'- gaguaUgUgCCCUCGGCCCGCGG--UAC- -5'
5737 5' -58.7 NC_001806.1 + 147234 0.66 0.787356
Target:  5'- -----cCGCGGGGGUCGGG-GCCGa- -3'
miRNA:   3'- gaguauGUGCCCUCGGCCCgCGGUac -5'
5737 5' -58.7 NC_001806.1 + 151688 0.66 0.787356
Target:  5'- uCUCGgcCGgGGGGGcCCGGGCuGCCc-- -3'
miRNA:   3'- -GAGUauGUgCCCUC-GGCCCG-CGGuac -5'
5737 5' -58.7 NC_001806.1 + 84248 0.66 0.787356
Target:  5'- -aCAcgGC-CGGGGGCgCGGGCGCaCcgGc -3'
miRNA:   3'- gaGUa-UGuGCCCUCG-GCCCGCG-GuaC- -5'
5737 5' -58.7 NC_001806.1 + 123743 0.66 0.787356
Target:  5'- aCUCcaacccCACGGGGccuCCGGGCGCCc-- -3'
miRNA:   3'- -GAGuau---GUGCCCUc--GGCCCGCGGuac -5'
5737 5' -58.7 NC_001806.1 + 38650 0.66 0.778276
Target:  5'- cCUUAUACcCGuGGuGCCGGG-GCCGg- -3'
miRNA:   3'- -GAGUAUGuGC-CCuCGGCCCgCGGUac -5'
5737 5' -58.7 NC_001806.1 + 3529 0.66 0.778276
Target:  5'- gUCGUcgccccccGCGgGGGAGgCGGGCGCgGc- -3'
miRNA:   3'- gAGUA--------UGUgCCCUCgGCCCGCGgUac -5'
5737 5' -58.7 NC_001806.1 + 35271 0.66 0.76907
Target:  5'- ----cGCGCGGGAGUCguggcuuugGGGCGCaucCAUGg -3'
miRNA:   3'- gaguaUGUGCCCUCGG---------CCCGCG---GUAC- -5'
5737 5' -58.7 NC_001806.1 + 128275 0.66 0.768143
Target:  5'- gUCA-GCACGGcgcGAGCCGGGCcgacgacGCgAUGa -3'
miRNA:   3'- gAGUaUGUGCC---CUCGGCCCG-------CGgUAC- -5'
5737 5' -58.7 NC_001806.1 + 12978 0.67 0.759746
Target:  5'- uCUCGgACAgcucCGGGGGCagcaGGGUGCuCGUGu -3'
miRNA:   3'- -GAGUaUGU----GCCCUCGg---CCCGCG-GUAC- -5'
5737 5' -58.7 NC_001806.1 + 39202 0.67 0.759746
Target:  5'- gUC-UGCGuucuUGGGGGCCGGGCcccGCCGc- -3'
miRNA:   3'- gAGuAUGU----GCCCUCGGCCCG---CGGUac -5'
5737 5' -58.7 NC_001806.1 + 23792 0.67 0.740778
Target:  5'- -----cCACGGGGccGCCGGGgGCCGc- -3'
miRNA:   3'- gaguauGUGCCCU--CGGCCCgCGGUac -5'
5737 5' -58.7 NC_001806.1 + 59045 0.67 0.740778
Target:  5'- cCUCc-ACGgGGGAGgCGGGgGCCAc- -3'
miRNA:   3'- -GAGuaUGUgCCCUCgGCCCgCGGUac -5'
5737 5' -58.7 NC_001806.1 + 3339 0.67 0.740778
Target:  5'- cCUCcgGcCGCGGGgggcuggcgGGCCGGGCcccgGCCAg- -3'
miRNA:   3'- -GAGuaU-GUGCCC---------UCGGCCCG----CGGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.