miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5738 5' -57.2 NC_001806.1 + 135225 0.66 0.900001
Target:  5'- cCCCAggaugACaUCGGAGCCCGUgauGGgcgcgccuaccCGGGGGg -3'
miRNA:   3'- -GGGU-----UG-AGCCUUGGGCG---CCa----------GUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 26698 0.66 0.893626
Target:  5'- gCCCGGCgUGG-GCCCGgGGggCGGGGc -3'
miRNA:   3'- -GGGUUGaGCCuUGGGCgCCa-GUCCUc -5'
5738 5' -57.2 NC_001806.1 + 113748 0.66 0.893626
Target:  5'- aCCGGCcCGGAGCUgGgCGGgCAGGGc -3'
miRNA:   3'- gGGUUGaGCCUUGGgC-GCCaGUCCUc -5'
5738 5' -57.2 NC_001806.1 + 101149 0.66 0.892976
Target:  5'- cCCCAcCUCGcAGCCagCGCGGugguccacguuaaUCGGGAGu -3'
miRNA:   3'- -GGGUuGAGCcUUGG--GCGCC-------------AGUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 13488 0.66 0.887031
Target:  5'- uCCgGACgucuUCGGAGgcCCCGCGGacaaUCuGGGGg -3'
miRNA:   3'- -GGgUUG----AGCCUU--GGGCGCC----AGuCCUC- -5'
5738 5' -57.2 NC_001806.1 + 75499 0.66 0.882971
Target:  5'- aCCGGCgcgCGGGaaaGCCuCGCGGgccacgagggcagguUCGGGGGc -3'
miRNA:   3'- gGGUUGa--GCCU---UGG-GCGCC---------------AGUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 122927 0.66 0.880222
Target:  5'- uCCCGACgccaGGGACCa-CGGUCuGGuGg -3'
miRNA:   3'- -GGGUUGag--CCUUGGgcGCCAGuCCuC- -5'
5738 5' -57.2 NC_001806.1 + 89584 0.66 0.880222
Target:  5'- gCCgGGCUuaUGGAccGCCgGCGGccgaCAGGAGa -3'
miRNA:   3'- -GGgUUGA--GCCU--UGGgCGCCa---GUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 132677 0.66 0.873201
Target:  5'- gCCGcGCUCcuGGGggccugGCCCGCGGUgGGGGc -3'
miRNA:   3'- gGGU-UGAG--CCU------UGGGCGCCAgUCCUc -5'
5738 5' -57.2 NC_001806.1 + 20392 0.67 0.858546
Target:  5'- gUCCGGCgggCGGGACCgGgGGgccCGGGGa -3'
miRNA:   3'- -GGGUUGa--GCCUUGGgCgCCa--GUCCUc -5'
5738 5' -57.2 NC_001806.1 + 37602 0.67 0.850922
Target:  5'- gCCAGCacCGGGGCCCaggggcuauucGCGG-CGGGAa -3'
miRNA:   3'- gGGUUGa-GCCUUGGG-----------CGCCaGUCCUc -5'
5738 5' -57.2 NC_001806.1 + 53870 0.67 0.850922
Target:  5'- gCCAGCUguuUGGcAGCCgCGCGGggaUCAGGGu -3'
miRNA:   3'- gGGUUGA---GCC-UUGG-GCGCC---AGUCCUc -5'
5738 5' -57.2 NC_001806.1 + 6177 0.67 0.850922
Target:  5'- -gCGGCUgCGGAGCaCGCGGacCGGGAGc -3'
miRNA:   3'- ggGUUGA-GCCUUGgGCGCCa-GUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 135617 0.67 0.850922
Target:  5'- cCCCcGCUguugcgcgcCGGAGCUCGCGGUCGc--- -3'
miRNA:   3'- -GGGuUGA---------GCCUUGGGCGCCAGUccuc -5'
5738 5' -57.2 NC_001806.1 + 17055 0.67 0.850922
Target:  5'- cCCCGAacgaCGGGcCCCGgGGUUuuaAGGAGc -3'
miRNA:   3'- -GGGUUga--GCCUuGGGCgCCAG---UCCUC- -5'
5738 5' -57.2 NC_001806.1 + 27311 0.67 0.850149
Target:  5'- aCCAGCguccgccgagucuUCGGGGCCCGgcccauUGGgCGGGAGu -3'
miRNA:   3'- gGGUUG-------------AGCCUUGGGC------GCCaGUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 143582 0.67 0.850149
Target:  5'- aCCCAcCUCGGGauacccaGCCC-CGGUCccccguuccccGGGGGc -3'
miRNA:   3'- -GGGUuGAGCCU-------UGGGcGCCAG-----------UCCUC- -5'
5738 5' -57.2 NC_001806.1 + 93871 0.67 0.843108
Target:  5'- uCCCGGCUUGccggucggcGGGCCCGCGGgaggCcgccccgaagAGGGGg -3'
miRNA:   3'- -GGGUUGAGC---------CUUGGGCGCCa---G----------UCCUC- -5'
5738 5' -57.2 NC_001806.1 + 149524 0.67 0.840728
Target:  5'- cCCCAACagGGcGACCCcgGUcccuguauauauagGGUCAGGGGg -3'
miRNA:   3'- -GGGUUGagCC-UUGGG--CG--------------CCAGUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 130829 0.67 0.835111
Target:  5'- gCCuGCaUUGGGACUCgGCGGcCGGGGGa -3'
miRNA:   3'- gGGuUG-AGCCUUGGG-CGCCaGUCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.