miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5743 3' -58.8 NC_001806.1 + 82509 0.66 0.817123
Target:  5'- -aCCUGGGuGGCCGguGUagGGCUUgCCCa -3'
miRNA:   3'- caGGGCCUcCUGGUguCA--CCGAA-GGG- -5'
5743 3' -58.8 NC_001806.1 + 80013 0.66 0.817123
Target:  5'- uUCCCguaGGcGGGCCGCAGcGGCgccuuacgcgCCCc -3'
miRNA:   3'- cAGGG---CCuCCUGGUGUCaCCGaa--------GGG- -5'
5743 3' -58.8 NC_001806.1 + 24798 0.66 0.817123
Target:  5'- -gCCCGGGGGcccuGCCGCc--GGCgccgCCCg -3'
miRNA:   3'- caGGGCCUCC----UGGUGucaCCGaa--GGG- -5'
5743 3' -58.8 NC_001806.1 + 9154 0.66 0.817123
Target:  5'- -gCCUGGAGGGCCAuCGGggagacaacGGCcguguagCCCg -3'
miRNA:   3'- caGGGCCUCCUGGU-GUCa--------CCGaa-----GGG- -5'
5743 3' -58.8 NC_001806.1 + 117660 0.66 0.817123
Target:  5'- cUCCCgGGAGGcUCGCAGUGGUa---- -3'
miRNA:   3'- cAGGG-CCUCCuGGUGUCACCGaaggg -5'
5743 3' -58.8 NC_001806.1 + 28135 0.66 0.808585
Target:  5'- -cCCCGGAGcgaguacccgccGGCCugAG-GGCcgCCCc -3'
miRNA:   3'- caGGGCCUC------------CUGGugUCaCCGaaGGG- -5'
5743 3' -58.8 NC_001806.1 + 20316 0.66 0.803388
Target:  5'- gGUCCCgcccgccggccaaugGGGGGGCgGCaAGgcgGGCggCCCu -3'
miRNA:   3'- -CAGGG---------------CCUCCUGgUG-UCa--CCGaaGGG- -5'
5743 3' -58.8 NC_001806.1 + 76293 0.66 0.799893
Target:  5'- -gCCgCGGAGGAgauauCCGCGGUGcGCaacgaCCCg -3'
miRNA:   3'- caGG-GCCUCCU-----GGUGUCAC-CGaa---GGG- -5'
5743 3' -58.8 NC_001806.1 + 80263 0.66 0.799893
Target:  5'- -gCCCGGAGG-CCc----GGUUUCCCg -3'
miRNA:   3'- caGGGCCUCCuGGugucaCCGAAGGG- -5'
5743 3' -58.8 NC_001806.1 + 55737 0.66 0.799893
Target:  5'- -aCCCGGGGGACCcCGauGUGGgggCCUc -3'
miRNA:   3'- caGGGCCUCCUGGuGU--CACCgaaGGG- -5'
5743 3' -58.8 NC_001806.1 + 73989 0.66 0.799893
Target:  5'- -cCCCGGccGGGGcggccCCGCAGggGGCUccgcgCCCa -3'
miRNA:   3'- caGGGCC--UCCU-----GGUGUCa-CCGAa----GGG- -5'
5743 3' -58.8 NC_001806.1 + 71422 0.66 0.791056
Target:  5'- aUCCCGGAGGA-CACcGUcGCgccaCCCa -3'
miRNA:   3'- cAGGGCCUCCUgGUGuCAcCGaa--GGG- -5'
5743 3' -58.8 NC_001806.1 + 30639 0.66 0.791056
Target:  5'- --gCCGGGGGGgCGCGGccagGGUgggCCCg -3'
miRNA:   3'- cagGGCCUCCUgGUGUCa---CCGaa-GGG- -5'
5743 3' -58.8 NC_001806.1 + 22262 0.66 0.791056
Target:  5'- -aCgCGGAGG-CCAUggGGUGGCUccagaaCCCg -3'
miRNA:   3'- caGgGCCUCCuGGUG--UCACCGAa-----GGG- -5'
5743 3' -58.8 NC_001806.1 + 126869 0.66 0.791056
Target:  5'- -gCCUGGAGGACgGCGccggGGCU-CUCg -3'
miRNA:   3'- caGGGCCUCCUGgUGUca--CCGAaGGG- -5'
5743 3' -58.8 NC_001806.1 + 2284 0.66 0.791056
Target:  5'- -gCUCGGcGGACCACuccGGCggCCCc -3'
miRNA:   3'- caGGGCCuCCUGGUGucaCCGaaGGG- -5'
5743 3' -58.8 NC_001806.1 + 74361 0.66 0.782082
Target:  5'- -cCCCcGAGGACCugGCGGccUGGCUcUCCg -3'
miRNA:   3'- caGGGcCUCCUGG--UGUC--ACCGAaGGG- -5'
5743 3' -58.8 NC_001806.1 + 27843 0.66 0.782082
Target:  5'- gGUCCCcGGGGAcggggccgccCCGCGGUGGgcCUgccUCCCc -3'
miRNA:   3'- -CAGGGcCUCCU----------GGUGUCACC--GA---AGGG- -5'
5743 3' -58.8 NC_001806.1 + 151104 0.67 0.772979
Target:  5'- gGUCgCGGGGG-UCGCGGggGGCUccggcgcccccUCCCc -3'
miRNA:   3'- -CAGgGCCUCCuGGUGUCa-CCGA-----------AGGG- -5'
5743 3' -58.8 NC_001806.1 + 145649 0.67 0.772979
Target:  5'- gGUgCCGGGGGACCGgGGUGa--UCUCu -3'
miRNA:   3'- -CAgGGCCUCCUGGUgUCACcgaAGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.