Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5746 | 5' | -53.7 | NC_001806.1 | + | 86160 | 0.66 | 0.967305 |
Target: 5'- gUCCUUGAUggaCGGGACcuGCGCgCggcggGCCa -3' miRNA: 3'- gAGGAACUG---GUCUUGu-UGCGgGa----CGG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 98719 | 0.66 | 0.967305 |
Target: 5'- gUCC-UGGCCGGccuGGCGGCGgCCUucuucGCCu -3' miRNA: 3'- gAGGaACUGGUC---UUGUUGCgGGA-----CGG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 30626 | 0.66 | 0.964034 |
Target: 5'- cCUCCgacucagGGCCGGGGgGGCGCg--GCCa -3' miRNA: 3'- -GAGGaa-----CUGGUCUUgUUGCGggaCGG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 21891 | 0.66 | 0.960542 |
Target: 5'- cCUCCgcgGGCCGcaucGAGCGcCGCCggGCCc -3' miRNA: 3'- -GAGGaa-CUGGU----CUUGUuGCGGgaCGG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 98441 | 0.66 | 0.960542 |
Target: 5'- -gCCacgaGAUCaAGGACAGCGgCCUGCUg -3' miRNA: 3'- gaGGaa--CUGG-UCUUGUUGCgGGACGG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 89272 | 0.66 | 0.966988 |
Target: 5'- gCUCCgcgagGGCCGGcgggcGCAAaaaacccggacgcCGCCCUGgCCg -3' miRNA: 3'- -GAGGaa---CUGGUCu----UGUU-------------GCGGGAC-GG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 131460 | 0.66 | 0.95287 |
Target: 5'- gUCCgcgGACCG--GCGGCGCUgUUGCCg -3' miRNA: 3'- gAGGaa-CUGGUcuUGUUGCGG-GACGG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 78781 | 0.66 | 0.967305 |
Target: 5'- gCUCgcgGGCCGGAcgccgccuugcGCGAUGCCgUGUCg -3' miRNA: 3'- -GAGgaaCUGGUCU-----------UGUUGCGGgACGG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 52149 | 0.66 | 0.967305 |
Target: 5'- gUCCUgGGCCAccuGAC-GCGCCUaGCCa -3' miRNA: 3'- gAGGAaCUGGUc--UUGuUGCGGGaCGG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 138653 | 0.66 | 0.960542 |
Target: 5'- uCUCCUUuuacaACUuucuGCAGCGCCCggGCCu -3' miRNA: 3'- -GAGGAAc----UGGucu-UGUUGCGGGa-CGG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 56280 | 0.66 | 0.95287 |
Target: 5'- gUCCUuccUGugCAG-GCGACGCCggaGCCc -3' miRNA: 3'- gAGGA---ACugGUCuUGUUGCGGga-CGG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 87116 | 0.66 | 0.967305 |
Target: 5'- gUCCUUGcccgccuCCAGGu--GCGCCaCUGCg -3' miRNA: 3'- gAGGAACu------GGUCUuguUGCGG-GACGg -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 4433 | 0.66 | 0.960542 |
Target: 5'- -gCCcgGGCgGGGGCGGCGUCC-GCCc -3' miRNA: 3'- gaGGaaCUGgUCUUGUUGCGGGaCGG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 21267 | 0.66 | 0.960542 |
Target: 5'- -cCCacGACCucGACGACGCCCgGCg -3' miRNA: 3'- gaGGaaCUGGucUUGUUGCGGGaCGg -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 113132 | 0.66 | 0.964034 |
Target: 5'- gUUUUUGaacGCCugGGGGCAGCGCCUgGCCc -3' miRNA: 3'- gAGGAAC---UGG--UCUUGUUGCGGGaCGG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 79415 | 0.67 | 0.934667 |
Target: 5'- cCUCCUUGcCCcGGACccccuuuCGCCCaccGCCg -3' miRNA: 3'- -GAGGAACuGGuCUUGuu-----GCGGGa--CGG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 58244 | 0.67 | 0.924097 |
Target: 5'- -aCCUgcagucGCCGGAGCAcCGCCCgcaUGCUg -3' miRNA: 3'- gaGGAac----UGGUCUUGUuGCGGG---ACGG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 50449 | 0.67 | 0.948682 |
Target: 5'- -gCCUuugcggacgUGGCgCGGGAgGagcuguuucGCGCCCUGCCc -3' miRNA: 3'- gaGGA---------ACUG-GUCUUgU---------UGCGGGACGG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 131203 | 0.67 | 0.929506 |
Target: 5'- -gCCUgccgGACCcacaGGcAGCuguACGCCCUGCUu -3' miRNA: 3'- gaGGAa---CUGG----UC-UUGu--UGCGGGACGG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 75568 | 0.67 | 0.944254 |
Target: 5'- -gCCgggGACCAcucccccagcGGGC-GCGCCCUGCa -3' miRNA: 3'- gaGGaa-CUGGU----------CUUGuUGCGGGACGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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