miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5746 5' -53.7 NC_001806.1 + 17346 1.11 0.003262
Target:  5'- cCUCCUUGACCAGAACAACGCCCUGCCc -3'
miRNA:   3'- -GAGGAACUGGUCUUGUUGCGGGACGG- -5'
5746 5' -53.7 NC_001806.1 + 91061 0.76 0.514529
Target:  5'- cCUCCgucaUGGCCGGAGaCGcCGCCCUGgCCc -3'
miRNA:   3'- -GAGGa---ACUGGUCUU-GUuGCGGGAC-GG- -5'
5746 5' -53.7 NC_001806.1 + 95762 0.74 0.616605
Target:  5'- uCUCCUgcgacACCAGGugGACccgGCCCUGCUc -3'
miRNA:   3'- -GAGGAac---UGGUCUugUUG---CGGGACGG- -5'
5746 5' -53.7 NC_001806.1 + 85081 0.72 0.749528
Target:  5'- cCUUCUgucugGACCAGAcCGugGCCgacaaCUGCCu -3'
miRNA:   3'- -GAGGAa----CUGGUCUuGUugCGG-----GACGG- -5'
5746 5' -53.7 NC_001806.1 + 151513 0.72 0.749528
Target:  5'- -aCCUggGACUgugcgguuGGGACGGCGCCCguggGCCc -3'
miRNA:   3'- gaGGAa-CUGG--------UCUUGUUGCGGGa---CGG- -5'
5746 5' -53.7 NC_001806.1 + 50897 0.72 0.749528
Target:  5'- aCUCCgcgcGGCCgcGGAGCAcguggaucuGCGCCCcGCCu -3'
miRNA:   3'- -GAGGaa--CUGG--UCUUGU---------UGCGGGaCGG- -5'
5746 5' -53.7 NC_001806.1 + 51817 0.71 0.78778
Target:  5'- -aCCgUGGCCGGccugcGCGACGCCCU-CCa -3'
miRNA:   3'- gaGGaACUGGUCu----UGUUGCGGGAcGG- -5'
5746 5' -53.7 NC_001806.1 + 56878 0.71 0.797004
Target:  5'- aUCC---ACCAGAGC-GCGCgCUGCCu -3'
miRNA:   3'- gAGGaacUGGUCUUGuUGCGgGACGG- -5'
5746 5' -53.7 NC_001806.1 + 139748 0.7 0.806076
Target:  5'- -gCCUcgcUGACCAGcGCAcUGCCCgacGCCg -3'
miRNA:   3'- gaGGA---ACUGGUCuUGUuGCGGGa--CGG- -5'
5746 5' -53.7 NC_001806.1 + 141417 0.7 0.814984
Target:  5'- -aCCa-GGCCGGGGCGGCGCgCgGCCa -3'
miRNA:   3'- gaGGaaCUGGUCUUGUUGCGgGaCGG- -5'
5746 5' -53.7 NC_001806.1 + 39173 0.7 0.823721
Target:  5'- -cCCUUGGaucgccCCGGGGCGGCGgCCUUGUCu -3'
miRNA:   3'- gaGGAACU------GGUCUUGUUGC-GGGACGG- -5'
5746 5' -53.7 NC_001806.1 + 70309 0.7 0.832278
Target:  5'- cCUCCUguUGAUUAGcAUGuACGCCCUGgCCg -3'
miRNA:   3'- -GAGGA--ACUGGUCuUGU-UGCGGGAC-GG- -5'
5746 5' -53.7 NC_001806.1 + 53303 0.7 0.840648
Target:  5'- gUCCUcGcccGCCAucGAGcCAACGCCCUGaCCa -3'
miRNA:   3'- gAGGAaC---UGGU--CUU-GUUGCGGGAC-GG- -5'
5746 5' -53.7 NC_001806.1 + 78592 0.69 0.879421
Target:  5'- -cCCacgGGCCAGcACGuCGCCgUGCCg -3'
miRNA:   3'- gaGGaa-CUGGUCuUGUuGCGGgACGG- -5'
5746 5' -53.7 NC_001806.1 + 137589 0.69 0.886517
Target:  5'- cCUCCgggGGCgaggaguugCGGAACGaguuucGCGCCCUGgCCg -3'
miRNA:   3'- -GAGGaa-CUG---------GUCUUGU------UGCGGGAC-GG- -5'
5746 5' -53.7 NC_001806.1 + 130736 0.69 0.886517
Target:  5'- gUCCcgGagaGCUGGAGCucGugGCCCUGCCc -3'
miRNA:   3'- gAGGaaC---UGGUCUUG--UugCGGGACGG- -5'
5746 5' -53.7 NC_001806.1 + 128027 0.69 0.886517
Target:  5'- gCUCgcaGGCCAGGccgACGAUGCCCguggcgGCCa -3'
miRNA:   3'- -GAGgaaCUGGUCU---UGUUGCGGGa-----CGG- -5'
5746 5' -53.7 NC_001806.1 + 115301 0.69 0.886517
Target:  5'- -aCCacGGCCAGAGCGACccguCCCggGCCu -3'
miRNA:   3'- gaGGaaCUGGUCUUGUUGc---GGGa-CGG- -5'
5746 5' -53.7 NC_001806.1 + 30133 0.68 0.89338
Target:  5'- uCUCCccacaGGCCccccGCGGCGCCCaUGCCa -3'
miRNA:   3'- -GAGGaa---CUGGucu-UGUUGCGGG-ACGG- -5'
5746 5' -53.7 NC_001806.1 + 90564 0.68 0.89338
Target:  5'- -gCCUgGACCcGGACcGCGCCCU-CCu -3'
miRNA:   3'- gaGGAaCUGGuCUUGuUGCGGGAcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.