Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5746 | 5' | -53.7 | NC_001806.1 | + | 52149 | 0.66 | 0.967305 |
Target: 5'- gUCCUgGGCCAccuGAC-GCGCCUaGCCa -3' miRNA: 3'- gAGGAaCUGGUc--UUGuUGCGGGaCGG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 53303 | 0.7 | 0.840648 |
Target: 5'- gUCCUcGcccGCCAucGAGcCAACGCCCUGaCCa -3' miRNA: 3'- gAGGAaC---UGGU--CUU-GUUGCGGGAC-GG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 78592 | 0.69 | 0.879421 |
Target: 5'- -cCCacgGGCCAGcACGuCGCCgUGCCg -3' miRNA: 3'- gaGGaa-CUGGUCuUGUuGCGGgACGG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 115301 | 0.69 | 0.886517 |
Target: 5'- -aCCacGGCCAGAGCGACccguCCCggGCCu -3' miRNA: 3'- gaGGaaCUGGUCUUGUUGc---GGGa-CGG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 128027 | 0.69 | 0.886517 |
Target: 5'- gCUCgcaGGCCAGGccgACGAUGCCCguggcgGCCa -3' miRNA: 3'- -GAGgaaCUGGUCU---UGUUGCGGGa-----CGG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 130736 | 0.69 | 0.886517 |
Target: 5'- gUCCcgGagaGCUGGAGCucGugGCCCUGCCc -3' miRNA: 3'- gAGGaaC---UGGUCUUG--UugCGGGACGG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 137589 | 0.69 | 0.886517 |
Target: 5'- cCUCCgggGGCgaggaguugCGGAACGaguuucGCGCCCUGgCCg -3' miRNA: 3'- -GAGGaa-CUG---------GUCUUGU------UGCGGGAC-GG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 30133 | 0.68 | 0.89338 |
Target: 5'- uCUCCccacaGGCCccccGCGGCGCCCaUGCCa -3' miRNA: 3'- -GAGGaa---CUGGucu-UGUUGCGGG-ACGG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 90564 | 0.68 | 0.89338 |
Target: 5'- -gCCUgGACCcGGACcGCGCCCU-CCu -3' miRNA: 3'- gaGGAaCUGGuCUUGuUGCGGGAcGG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 70309 | 0.7 | 0.832278 |
Target: 5'- cCUCCUguUGAUUAGcAUGuACGCCCUGgCCg -3' miRNA: 3'- -GAGGA--ACUGGUCuUGU-UGCGGGAC-GG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 39173 | 0.7 | 0.823721 |
Target: 5'- -cCCUUGGaucgccCCGGGGCGGCGgCCUUGUCu -3' miRNA: 3'- gaGGAACU------GGUCUUGUUGC-GGGACGG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 141417 | 0.7 | 0.814984 |
Target: 5'- -aCCa-GGCCGGGGCGGCGCgCgGCCa -3' miRNA: 3'- gaGGaaCUGGUCUUGUUGCGgGaCGG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 91061 | 0.76 | 0.514529 |
Target: 5'- cCUCCgucaUGGCCGGAGaCGcCGCCCUGgCCc -3' miRNA: 3'- -GAGGa---ACUGGUCUU-GUuGCGGGAC-GG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 95762 | 0.74 | 0.616605 |
Target: 5'- uCUCCUgcgacACCAGGugGACccgGCCCUGCUc -3' miRNA: 3'- -GAGGAac---UGGUCUugUUG---CGGGACGG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 50897 | 0.72 | 0.749528 |
Target: 5'- aCUCCgcgcGGCCgcGGAGCAcguggaucuGCGCCCcGCCu -3' miRNA: 3'- -GAGGaa--CUGG--UCUUGU---------UGCGGGaCGG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 151513 | 0.72 | 0.749528 |
Target: 5'- -aCCUggGACUgugcgguuGGGACGGCGCCCguggGCCc -3' miRNA: 3'- gaGGAa-CUGG--------UCUUGUUGCGGGa---CGG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 85081 | 0.72 | 0.749528 |
Target: 5'- cCUUCUgucugGACCAGAcCGugGCCgacaaCUGCCu -3' miRNA: 3'- -GAGGAa----CUGGUCUuGUugCGG-----GACGG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 51817 | 0.71 | 0.78778 |
Target: 5'- -aCCgUGGCCGGccugcGCGACGCCCU-CCa -3' miRNA: 3'- gaGGaACUGGUCu----UGUUGCGGGAcGG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 56878 | 0.71 | 0.797004 |
Target: 5'- aUCC---ACCAGAGC-GCGCgCUGCCu -3' miRNA: 3'- gAGGaacUGGUCUUGuUGCGgGACGG- -5' |
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5746 | 5' | -53.7 | NC_001806.1 | + | 139748 | 0.7 | 0.806076 |
Target: 5'- -gCCUcgcUGACCAGcGCAcUGCCCgacGCCg -3' miRNA: 3'- gaGGA---ACUGGUCuUGUuGCGGGa--CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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