miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5746 5' -53.7 NC_001806.1 + 4433 0.66 0.960542
Target:  5'- -gCCcgGGCgGGGGCGGCGUCC-GCCc -3'
miRNA:   3'- gaGGaaCUGgUCUUGUUGCGGGaCGG- -5'
5746 5' -53.7 NC_001806.1 + 12754 0.67 0.944254
Target:  5'- uUCCgcaaaUGACCAGGGC--UGCCaggagaCUGCCg -3'
miRNA:   3'- gAGGa----ACUGGUCUUGuuGCGG------GACGG- -5'
5746 5' -53.7 NC_001806.1 + 17346 1.11 0.003262
Target:  5'- cCUCCUUGACCAGAACAACGCCCUGCCc -3'
miRNA:   3'- -GAGGAACUGGUCUUGUUGCGGGACGG- -5'
5746 5' -53.7 NC_001806.1 + 21267 0.66 0.960542
Target:  5'- -cCCacGACCucGACGACGCCCgGCg -3'
miRNA:   3'- gaGGaaCUGGucUUGUUGCGGGaCGg -5'
5746 5' -53.7 NC_001806.1 + 21891 0.66 0.960542
Target:  5'- cCUCCgcgGGCCGcaucGAGCGcCGCCggGCCc -3'
miRNA:   3'- -GAGGaa-CUGGU----CUUGUuGCGGgaCGG- -5'
5746 5' -53.7 NC_001806.1 + 22504 0.68 0.906396
Target:  5'- uUCCUgcUGACCAGccuGCGccGCGCCUacgcGCCc -3'
miRNA:   3'- gAGGA--ACUGGUCu--UGU--UGCGGGa---CGG- -5'
5746 5' -53.7 NC_001806.1 + 23180 0.67 0.929506
Target:  5'- gCUgUUUGAcaaCCAGAGCcuGCGCCCccUGCUg -3'
miRNA:   3'- -GAgGAACU---GGUCUUGu-UGCGGG--ACGG- -5'
5746 5' -53.7 NC_001806.1 + 23564 0.68 0.918442
Target:  5'- -cCCggGGcCCAGccacacGGCGGCGCCCgcgGCCg -3'
miRNA:   3'- gaGGaaCU-GGUC------UUGUUGCGGGa--CGG- -5'
5746 5' -53.7 NC_001806.1 + 28510 0.68 0.918442
Target:  5'- -cCUUUGACuCAGAcGCAGgGCCCggggucGCCg -3'
miRNA:   3'- gaGGAACUG-GUCU-UGUUgCGGGa-----CGG- -5'
5746 5' -53.7 NC_001806.1 + 30133 0.68 0.89338
Target:  5'- uCUCCccacaGGCCccccGCGGCGCCCaUGCCa -3'
miRNA:   3'- -GAGGaa---CUGGucu-UGUUGCGGG-ACGG- -5'
5746 5' -53.7 NC_001806.1 + 30626 0.66 0.964034
Target:  5'- cCUCCgacucagGGCCGGGGgGGCGCg--GCCa -3'
miRNA:   3'- -GAGGaa-----CUGGUCUUgUUGCGggaCGG- -5'
5746 5' -53.7 NC_001806.1 + 31065 0.68 0.918442
Target:  5'- gUCCUggugGACCAGAcgggaaACAugGCGaCCCgGCUg -3'
miRNA:   3'- gAGGAa---CUGGUCU------UGU--UGC-GGGaCGG- -5'
5746 5' -53.7 NC_001806.1 + 31238 0.68 0.912541
Target:  5'- gCUgUUcGACCAGGGCAcccuaguggGCGCCCUGg- -3'
miRNA:   3'- -GAgGAaCUGGUCUUGU---------UGCGGGACgg -5'
5746 5' -53.7 NC_001806.1 + 36186 0.67 0.948682
Target:  5'- -aUCUUGACgCGu--CGAUGCUCUGCCg -3'
miRNA:   3'- gaGGAACUG-GUcuuGUUGCGGGACGG- -5'
5746 5' -53.7 NC_001806.1 + 39173 0.7 0.823721
Target:  5'- -cCCUUGGaucgccCCGGGGCGGCGgCCUUGUCu -3'
miRNA:   3'- gaGGAACU------GGUCUUGUUGC-GGGACGG- -5'
5746 5' -53.7 NC_001806.1 + 41097 0.68 0.900008
Target:  5'- gUCCgcuGCCGGAACccacgGACGCCggGCCg -3'
miRNA:   3'- gAGGaacUGGUCUUG-----UUGCGGgaCGG- -5'
5746 5' -53.7 NC_001806.1 + 50449 0.67 0.948682
Target:  5'- -gCCUuugcggacgUGGCgCGGGAgGagcuguuucGCGCCCUGCCc -3'
miRNA:   3'- gaGGA---------ACUG-GUCUUgU---------UGCGGGACGG- -5'
5746 5' -53.7 NC_001806.1 + 50897 0.72 0.749528
Target:  5'- aCUCCgcgcGGCCgcGGAGCAcguggaucuGCGCCCcGCCu -3'
miRNA:   3'- -GAGGaa--CUGG--UCUUGU---------UGCGGGaCGG- -5'
5746 5' -53.7 NC_001806.1 + 51396 0.67 0.944254
Target:  5'- gCUCCUUaGCgCGGccGugGGCGCCUUGCg -3'
miRNA:   3'- -GAGGAAcUG-GUC--UugUUGCGGGACGg -5'
5746 5' -53.7 NC_001806.1 + 51817 0.71 0.78778
Target:  5'- -aCCgUGGCCGGccugcGCGACGCCCU-CCa -3'
miRNA:   3'- gaGGaACUGGUCu----UGUUGCGGGAcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.