miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5749 3' -48 NC_001806.1 + 29270 0.66 0.999524
Target:  5'- gCUGCGACAccuucccGUGCau---GCACCGCu -3'
miRNA:   3'- -GACGCUGUac-----UACGguuuuUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 150790 0.66 0.999524
Target:  5'- -aGCGGCuUGGUGCggagcuccCGGGAGCuCCGCg -3'
miRNA:   3'- gaCGCUGuACUACG--------GUUUUUGuGGUG- -5'
5749 3' -48 NC_001806.1 + 53463 0.66 0.999479
Target:  5'- uUGuCGACGaGAUuuaauaaaaauaaCCAAAAACACCACa -3'
miRNA:   3'- gAC-GCUGUaCUAc------------GGUUUUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 77005 0.66 0.999455
Target:  5'- -cGCGGCAUGcgagcagcuucgcGCCcugcAGGACACCACc -3'
miRNA:   3'- gaCGCUGUACua-----------CGGu---UUUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 129877 0.66 0.999404
Target:  5'- -cGUGACcacGUGggGCCA---AUACCGCg -3'
miRNA:   3'- gaCGCUG---UACuaCGGUuuuUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 25815 0.66 0.999404
Target:  5'- -cGUGACGUGugacGUGCgGAGuGCGCCGu -3'
miRNA:   3'- gaCGCUGUAC----UACGgUUUuUGUGGUg -5'
5749 3' -48 NC_001806.1 + 21326 0.66 0.999404
Target:  5'- -gGCGAg--GAcGCCGGGGACGCCGu -3'
miRNA:   3'- gaCGCUguaCUaCGGUUUUUGUGGUg -5'
5749 3' -48 NC_001806.1 + 4681 0.66 0.999404
Target:  5'- -gGCGACAggcgguccgUGggGuCCGGAuacGCGCCGCg -3'
miRNA:   3'- gaCGCUGU---------ACuaC-GGUUUu--UGUGGUG- -5'
5749 3' -48 NC_001806.1 + 98998 0.66 0.999404
Target:  5'- --cCGACAUGGucaUGCgCAA--GCGCCGCa -3'
miRNA:   3'- gacGCUGUACU---ACG-GUUuuUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 113846 0.66 0.999259
Target:  5'- aUGCGGCGcGcgGCCcuGGACcGCCAUc -3'
miRNA:   3'- gACGCUGUaCuaCGGuuUUUG-UGGUG- -5'
5749 3' -48 NC_001806.1 + 24210 0.66 0.999259
Target:  5'- cCUGCGAC-UGGcccGCCGAcGGGC-CCGCg -3'
miRNA:   3'- -GACGCUGuACUa--CGGUU-UUUGuGGUG- -5'
5749 3' -48 NC_001806.1 + 141694 0.66 0.999259
Target:  5'- -gGUGAUAUGGguccugGCCGAuguaACCACg -3'
miRNA:   3'- gaCGCUGUACUa-----CGGUUuuugUGGUG- -5'
5749 3' -48 NC_001806.1 + 23010 0.66 0.999259
Target:  5'- -cGCGACGcgcUGGUGCuCAu--GCGCCuGCg -3'
miRNA:   3'- gaCGCUGU---ACUACG-GUuuuUGUGG-UG- -5'
5749 3' -48 NC_001806.1 + 94722 0.66 0.999085
Target:  5'- gCUGCGGCGguaccUGCCcc--ACGCCGCc -3'
miRNA:   3'- -GACGCUGUacu--ACGGuuuuUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 46448 0.66 0.999085
Target:  5'- -gGCGGcCAUGcAUGCCcGGAugGCgGCg -3'
miRNA:   3'- gaCGCU-GUAC-UACGGuUUUugUGgUG- -5'
5749 3' -48 NC_001806.1 + 132349 0.66 0.998877
Target:  5'- gUGCGAgGUGGgccugcgGCCAcgcGGGCACCcGCa -3'
miRNA:   3'- gACGCUgUACUa------CGGUu--UUUGUGG-UG- -5'
5749 3' -48 NC_001806.1 + 87399 0.66 0.998877
Target:  5'- gCUGCGGCcgGAcGCUu-GGGCGCCu- -3'
miRNA:   3'- -GACGCUGuaCUaCGGuuUUUGUGGug -5'
5749 3' -48 NC_001806.1 + 97059 0.66 0.998854
Target:  5'- --cCGACAUGGaGCUGAAaccggccAACGCCGCg -3'
miRNA:   3'- gacGCUGUACUaCGGUUU-------UUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 106930 0.67 0.998629
Target:  5'- -cGCGACGUcGGguuuUGCUuucguGAACGCCGCc -3'
miRNA:   3'- gaCGCUGUA-CU----ACGGuu---UUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 133473 0.67 0.998629
Target:  5'- cCUGacaaCGGCAUGcGUGCCGGAGgaggacGCACuCACg -3'
miRNA:   3'- -GAC----GCUGUAC-UACGGUUUU------UGUG-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.