miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5750 3' -56.3 NC_001806.1 + 151453 0.66 0.88774
Target:  5'- gGCGGCgGGGCGgcCGCGg---GCGCGCUc -3'
miRNA:   3'- -UGCCG-UCCGU--GUGCauugCGUGCGAu -5'
5750 3' -56.3 NC_001806.1 + 13554 0.66 0.88774
Target:  5'- uGCGGCAGGCGCGCuccaacACG-GCGUa- -3'
miRNA:   3'- -UGCCGUCCGUGUGcau---UGCgUGCGau -5'
5750 3' -56.3 NC_001806.1 + 83087 0.66 0.88774
Target:  5'- -aGGCGGGgGCGuuCG-AGCGCGCGUa- -3'
miRNA:   3'- ugCCGUCCgUGU--GCaUUGCGUGCGau -5'
5750 3' -56.3 NC_001806.1 + 95300 0.66 0.88774
Target:  5'- gGCGGgGGGCGCGgCG-GACGCGCcCa- -3'
miRNA:   3'- -UGCCgUCCGUGU-GCaUUGCGUGcGau -5'
5750 3' -56.3 NC_001806.1 + 37839 0.66 0.88774
Target:  5'- aGCGGgGGGggUGCuUGGCGCACGCc- -3'
miRNA:   3'- -UGCCgUCCguGUGcAUUGCGUGCGau -5'
5750 3' -56.3 NC_001806.1 + 38810 0.66 0.88774
Target:  5'- cGCGGggaccCGGGCGgGgGUGgauACGCugGCUGg -3'
miRNA:   3'- -UGCC-----GUCCGUgUgCAU---UGCGugCGAU- -5'
5750 3' -56.3 NC_001806.1 + 102907 0.66 0.88774
Target:  5'- aGCGGCGGGU---CGUuGCGCACGa-- -3'
miRNA:   3'- -UGCCGUCCGuguGCAuUGCGUGCgau -5'
5750 3' -56.3 NC_001806.1 + 41832 0.66 0.887048
Target:  5'- -gGGCGGGCgucagggccccggGCGCGUAcgugcgaGCGCGCa- -3'
miRNA:   3'- ugCCGUCCG-------------UGUGCAUug-----CGUGCGau -5'
5750 3' -56.3 NC_001806.1 + 62847 0.66 0.887048
Target:  5'- gGCGGUGGGCaucagcgcgacaaACugGUGuuGCGCAgGCc- -3'
miRNA:   3'- -UGCCGUCCG-------------UGugCAU--UGCGUgCGau -5'
5750 3' -56.3 NC_001806.1 + 24080 0.66 0.88072
Target:  5'- uCGGCgcuGGGCGCACagGGCGUGCuGCUGc -3'
miRNA:   3'- uGCCG---UCCGUGUGcaUUGCGUG-CGAU- -5'
5750 3' -56.3 NC_001806.1 + 57143 0.66 0.88072
Target:  5'- cGCGGUGGGcCGCGCGagggGAgggggUGCGCGCa- -3'
miRNA:   3'- -UGCCGUCC-GUGUGCa---UU-----GCGUGCGau -5'
5750 3' -56.3 NC_001806.1 + 151157 0.66 0.880006
Target:  5'- gGC-GCAGGCGCGCcaggugcuccgcgGUGACGCGCagGCg- -3'
miRNA:   3'- -UGcCGUCCGUGUG-------------CAUUGCGUG--CGau -5'
5750 3' -56.3 NC_001806.1 + 69694 0.66 0.873475
Target:  5'- uGCGGCGGGCGCuCGUgggggaguuugaGACGgccgaGCGCc- -3'
miRNA:   3'- -UGCCGUCCGUGuGCA------------UUGCg----UGCGau -5'
5750 3' -56.3 NC_001806.1 + 21975 0.66 0.866766
Target:  5'- cCGGCGGGUcgagcuggacgccgACGCG-AccuccggcgccuucuACGCGCGCUAu -3'
miRNA:   3'- uGCCGUCCG--------------UGUGCaU---------------UGCGUGCGAU- -5'
5750 3' -56.3 NC_001806.1 + 41726 0.66 0.866009
Target:  5'- cUGGCGGGCGCA---AACGCGgGCc- -3'
miRNA:   3'- uGCCGUCCGUGUgcaUUGCGUgCGau -5'
5750 3' -56.3 NC_001806.1 + 101839 0.66 0.866009
Target:  5'- gGCGGUgAGGCGCACc-AGCGC-CGCc- -3'
miRNA:   3'- -UGCCG-UCCGUGUGcaUUGCGuGCGau -5'
5750 3' -56.3 NC_001806.1 + 78675 0.66 0.866009
Target:  5'- gGCGGCagugcuccuGGGCGCGCccgucgucGUGGCGCucCGCa- -3'
miRNA:   3'- -UGCCG---------UCCGUGUG--------CAUUGCGu-GCGau -5'
5750 3' -56.3 NC_001806.1 + 102640 0.66 0.866009
Target:  5'- cACGGCgcacucgaAGGCGgAauaGUGGCGCugGCc- -3'
miRNA:   3'- -UGCCG--------UCCGUgUg--CAUUGCGugCGau -5'
5750 3' -56.3 NC_001806.1 + 113914 0.66 0.866009
Target:  5'- cGCGGC-GGCAUguaACGUGGCGaC-CGCg- -3'
miRNA:   3'- -UGCCGuCCGUG---UGCAUUGC-GuGCGau -5'
5750 3' -56.3 NC_001806.1 + 91179 0.66 0.865251
Target:  5'- cGCGGCccGCGCcaacgccgucgggGCGUAccugGCGCGCGCc- -3'
miRNA:   3'- -UGCCGucCGUG-------------UGCAU----UGCGUGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.