miRNA display CGI


Results 1 - 20 of 124 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5750 5' -59.8 NC_001806.1 + 111493 0.66 0.806274
Target:  5'- gGUCcggGCCCGUcguGUCuuucggUGGACCuugGGCCGUCg -3'
miRNA:   3'- gCAG---CGGGCG---CAG------ACCUGG---UUGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 43172 0.66 0.806274
Target:  5'- uG-CGUCCGCG-CgcccaaGGGCCAGuacCCGCCc -3'
miRNA:   3'- gCaGCGGGCGCaGa-----CCUGGUU---GGCGG- -5'
5750 5' -59.8 NC_001806.1 + 54709 0.66 0.806274
Target:  5'- aCGUcaCGCCCuCGg--GGACgCAGCCgGCCg -3'
miRNA:   3'- -GCA--GCGGGcGCagaCCUG-GUUGG-CGG- -5'
5750 5' -59.8 NC_001806.1 + 77403 0.66 0.805423
Target:  5'- cCG-CGCCCGCGccccugcUCgUGGAUCuuCgCGCCc -3'
miRNA:   3'- -GCaGCGGGCGC-------AG-ACCUGGuuG-GCGG- -5'
5750 5' -59.8 NC_001806.1 + 90893 0.66 0.805423
Target:  5'- cCGUgGCCCGCGcggccgcccacCUGGcguuugacgaaaACCAcgagggcGCCGCCc -3'
miRNA:   3'- -GCAgCGGGCGCa----------GACC------------UGGU-------UGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 97422 0.66 0.797705
Target:  5'- cCGUgGCCUGgGaCUGGguGCCAAagCGCCc -3'
miRNA:   3'- -GCAgCGGGCgCaGACC--UGGUUg-GCGG- -5'
5750 5' -59.8 NC_001806.1 + 24492 0.66 0.797705
Target:  5'- uGUC-CCCGCGcgaguaccgCcGGGCCGuGCUGCCg -3'
miRNA:   3'- gCAGcGGGCGCa--------GaCCUGGU-UGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 47684 0.66 0.797705
Target:  5'- gCG-CGCCaGCGUCcGGcaGCUGcACCGCCa -3'
miRNA:   3'- -GCaGCGGgCGCAGaCC--UGGU-UGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 115103 0.66 0.79684
Target:  5'- cCGUC-CCCGUGUUcgGGugCGcccagguGCCGCg -3'
miRNA:   3'- -GCAGcGGGCGCAGa-CCugGU-------UGGCGg -5'
5750 5' -59.8 NC_001806.1 + 96123 0.66 0.788997
Target:  5'- aGUUGCgCCGCcc--GGACugCAGCCGCCc -3'
miRNA:   3'- gCAGCG-GGCGcagaCCUG--GUUGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 49153 0.66 0.788997
Target:  5'- -cUCGCCCGUGgc-GGACgAGCCaGCg -3'
miRNA:   3'- gcAGCGGGCGCagaCCUGgUUGG-CGg -5'
5750 5' -59.8 NC_001806.1 + 119175 0.66 0.788997
Target:  5'- aCGUCGCuCUGC--UUGGcGCCG-CCGCCc -3'
miRNA:   3'- -GCAGCG-GGCGcaGACC-UGGUuGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 150115 0.66 0.788997
Target:  5'- ---gGCCC-CGUCcccggGGACCAACCcggcGCCc -3'
miRNA:   3'- gcagCGGGcGCAGa----CCUGGUUGG----CGG- -5'
5750 5' -59.8 NC_001806.1 + 79471 0.66 0.780159
Target:  5'- aGUgUGCaCCGCGgccccCUGGGCCGGCaGUCa -3'
miRNA:   3'- gCA-GCG-GGCGCa----GACCUGGUUGgCGG- -5'
5750 5' -59.8 NC_001806.1 + 52288 0.66 0.780159
Target:  5'- aCG-CGaCCCucaccggguacgGCGUCUGGGCCAccgACaGCCu -3'
miRNA:   3'- -GCaGC-GGG------------CGCAGACCUGGU---UGgCGG- -5'
5750 5' -59.8 NC_001806.1 + 77888 0.66 0.780159
Target:  5'- aCGUCGCCCuCGUC-GcGACCAcucucACgCGCg -3'
miRNA:   3'- -GCAGCGGGcGCAGaC-CUGGU-----UG-GCGg -5'
5750 5' -59.8 NC_001806.1 + 113838 0.66 0.780159
Target:  5'- --aCGCCCugaugcggcgcGCGgccCUGGACCGccaucgcgACUGCCg -3'
miRNA:   3'- gcaGCGGG-----------CGCa--GACCUGGU--------UGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 54017 0.66 0.780159
Target:  5'- aCGagGCCCGCGagggCacgaGGACCAACgCGgCa -3'
miRNA:   3'- -GCagCGGGCGCa---Ga---CCUGGUUG-GCgG- -5'
5750 5' -59.8 NC_001806.1 + 75786 0.66 0.771199
Target:  5'- cCGUCGCCUGCaGgcgCUGG-CgGGCaCGCa -3'
miRNA:   3'- -GCAGCGGGCG-Ca--GACCuGgUUG-GCGg -5'
5750 5' -59.8 NC_001806.1 + 23580 0.66 0.771199
Target:  5'- aCGgcggCGCCCGCGgccgccgccCUGGagGCCuACUGCUc -3'
miRNA:   3'- -GCa---GCGGGCGCa--------GACC--UGGuUGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.