miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5751 3' -54.6 NC_001806.1 + 151535 0.71 0.716926
Target:  5'- -cGGCg-CCCGugGGCCCgGGcgGCCg -3'
miRNA:   3'- cuCCGaaGGGUuuUCGGGgUCuaCGG- -5'
5751 3' -54.6 NC_001806.1 + 150880 0.68 0.847179
Target:  5'- cGGGCcagggCCCGGgcacgggccucGGGCCCCAGGcacgGCCc -3'
miRNA:   3'- cUCCGaa---GGGUU-----------UUCGGGGUCUa---CGG- -5'
5751 3' -54.6 NC_001806.1 + 150792 0.66 0.91756
Target:  5'- -cGGCUuggugcggagcUCCCGGGAGCUCCgcggaAGAcccagGCCg -3'
miRNA:   3'- cuCCGA-----------AGGGUUUUCGGGG-----UCUa----CGG- -5'
5751 3' -54.6 NC_001806.1 + 150456 0.7 0.776109
Target:  5'- cGGGGUUgCCCAuuaAGGGCCgCGGGaauUGCCg -3'
miRNA:   3'- -CUCCGAaGGGU---UUUCGGgGUCU---ACGG- -5'
5751 3' -54.6 NC_001806.1 + 149290 0.66 0.91756
Target:  5'- -cGGCUccUCCCcacccCCCUAGAUGCg -3'
miRNA:   3'- cuCCGA--AGGGuuuucGGGGUCUACGg -5'
5751 3' -54.6 NC_001806.1 + 147665 0.69 0.794866
Target:  5'- cGGGCggCCgGcuccGCCCCGGggGCCg -3'
miRNA:   3'- cUCCGaaGGgUuuu-CGGGGUCuaCGG- -5'
5751 3' -54.6 NC_001806.1 + 147036 0.71 0.696489
Target:  5'- uGAGGCcgCCCGcggggacGGCCCCGGAaGUCu -3'
miRNA:   3'- -CUCCGaaGGGUuu-----UCGGGGUCUaCGG- -5'
5751 3' -54.6 NC_001806.1 + 146690 0.7 0.766524
Target:  5'- cAGGCUgcggaagUCCAGgcGCCCacuaGGGUGCCc -3'
miRNA:   3'- cUCCGAa------GGGUUuuCGGGg---UCUACGG- -5'
5751 3' -54.6 NC_001806.1 + 145261 0.69 0.785559
Target:  5'- gGGGGCgcCCCAGAGGCUaaGGucgGCCa -3'
miRNA:   3'- -CUCCGaaGGGUUUUCGGggUCua-CGG- -5'
5751 3' -54.6 NC_001806.1 + 144999 0.66 0.933975
Target:  5'- aGGGGCcccggCCC-GGGGCCCCAcaacgGCCc -3'
miRNA:   3'- -CUCCGaa---GGGuUUUCGGGGUcua--CGG- -5'
5751 3' -54.6 NC_001806.1 + 144967 0.7 0.756814
Target:  5'- -uGGCggCCCGgcccGGGGCCCCGGcgGaCCc -3'
miRNA:   3'- cuCCGaaGGGU----UUUCGGGGUCuaC-GG- -5'
5751 3' -54.6 NC_001806.1 + 144895 0.67 0.911591
Target:  5'- gGAGGCUuuuccggguUCCCGgcccGGGGCCUgAGAUGa- -3'
miRNA:   3'- -CUCCGA---------AGGGU----UUUCGGGgUCUACgg -5'
5751 3' -54.6 NC_001806.1 + 144566 0.66 0.938948
Target:  5'- aAGaCUUUCCGGgcGCgUCCGGGUGCCg -3'
miRNA:   3'- cUCcGAAGGGUUuuCG-GGGUCUACGG- -5'
5751 3' -54.6 NC_001806.1 + 132989 0.67 0.898915
Target:  5'- -uGGCcgcUCCCucAGAGCCCUGGGccgggGCCg -3'
miRNA:   3'- cuCCGa--AGGGu-UUUCGGGGUCUa----CGG- -5'
5751 3' -54.6 NC_001806.1 + 131970 0.71 0.727036
Target:  5'- -uGGCggCCCuGGAGCgCCAGAccggGCCg -3'
miRNA:   3'- cuCCGaaGGGuUUUCGgGGUCUa---CGG- -5'
5751 3' -54.6 NC_001806.1 + 129698 0.69 0.794866
Target:  5'- gGAcGCcUCuCCGGAGGCCCgGGggGCCa -3'
miRNA:   3'- -CUcCGaAG-GGUUUUCGGGgUCuaCGG- -5'
5751 3' -54.6 NC_001806.1 + 127954 0.66 0.923281
Target:  5'- aGGGCgacgcggacUCCCGucuGAGCCCCcg--GCCa -3'
miRNA:   3'- cUCCGa--------AGGGUu--UUCGGGGucuaCGG- -5'
5751 3' -54.6 NC_001806.1 + 125848 0.66 0.938948
Target:  5'- cGGGCc-CCCGGccGCCgCGGAcGCCg -3'
miRNA:   3'- cUCCGaaGGGUUuuCGGgGUCUaCGG- -5'
5751 3' -54.6 NC_001806.1 + 123755 0.74 0.540962
Target:  5'- cGGGGCcUCCgGGc-GCCCCAGcgGCCc -3'
miRNA:   3'- -CUCCGaAGGgUUuuCGGGGUCuaCGG- -5'
5751 3' -54.6 NC_001806.1 + 120856 0.66 0.923281
Target:  5'- uGGGac-CCCGGcGGCCCCuGgcGCCg -3'
miRNA:   3'- cUCCgaaGGGUUuUCGGGGuCuaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.