miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5751 5' -52.9 NC_001806.1 + 126885 0.66 0.976608
Target:  5'- cGGGGCucUCGgGGC-CGCAGGAC-CCAg -3'
miRNA:   3'- -CUCUGu-AGCgCUGuGUGUCUUGcGGU- -5'
5751 5' -52.9 NC_001806.1 + 1497 0.66 0.976608
Target:  5'- gGGGGCGUCGUcgucgGGCuccaGCAGGGCGCgGg -3'
miRNA:   3'- -CUCUGUAGCG-----CUGug--UGUCUUGCGgU- -5'
5751 5' -52.9 NC_001806.1 + 71279 0.66 0.976608
Target:  5'- uGGAgGUcCGCGACGC-CGGAaacagucuccccGCGCCu -3'
miRNA:   3'- cUCUgUA-GCGCUGUGuGUCU------------UGCGGu -5'
5751 5' -52.9 NC_001806.1 + 50894 0.66 0.974006
Target:  5'- cGGACuccgCGCGGC-CGCGGAgcacguggaucuGCGCCc -3'
miRNA:   3'- cUCUGua--GCGCUGuGUGUCU------------UGCGGu -5'
5751 5' -52.9 NC_001806.1 + 29774 0.66 0.974006
Target:  5'- cGGACGcccCGCGccccccCACGCAGAgGCGCCGc -3'
miRNA:   3'- cUCUGUa--GCGCu-----GUGUGUCU-UGCGGU- -5'
5751 5' -52.9 NC_001806.1 + 22140 0.66 0.974006
Target:  5'- cGAGGCGgaggaggCGCGACGC-CGGuucgaggccucgGGCGCCc -3'
miRNA:   3'- -CUCUGUa------GCGCUGUGuGUC------------UUGCGGu -5'
5751 5' -52.9 NC_001806.1 + 12132 0.66 0.974006
Target:  5'- cGGuCG-CGCGACACAgGgcGAAUGCCAc -3'
miRNA:   3'- cUCuGUaGCGCUGUGUgU--CUUGCGGU- -5'
5751 5' -52.9 NC_001806.1 + 4316 0.66 0.973734
Target:  5'- -uGGCGUCGCGGCcggccaccgccGCGCGGGcccggcgGCGCUc -3'
miRNA:   3'- cuCUGUAGCGCUG-----------UGUGUCU-------UGCGGu -5'
5751 5' -52.9 NC_001806.1 + 7864 0.66 0.971199
Target:  5'- aGAGACGUCGCcccuGugGCccugGCGGAcgGCgGCCAu -3'
miRNA:   3'- -CUCUGUAGCG----CugUG----UGUCU--UG-CGGU- -5'
5751 5' -52.9 NC_001806.1 + 6125 0.66 0.971199
Target:  5'- aAGGCccggCGCGACcgacgccCGCAGAcgGCGCCGg -3'
miRNA:   3'- cUCUGua--GCGCUGu------GUGUCU--UGCGGU- -5'
5751 5' -52.9 NC_001806.1 + 111525 0.66 0.971199
Target:  5'- uGGGcCGUCGgGcACguACACGGGugGCCGg -3'
miRNA:   3'- -CUCuGUAGCgC-UG--UGUGUCUugCGGU- -5'
5751 5' -52.9 NC_001806.1 + 68327 0.66 0.970907
Target:  5'- cGGcCAUCGCcccggcaGACGCGCGGGACuGCUg -3'
miRNA:   3'- cUCuGUAGCG-------CUGUGUGUCUUG-CGGu -5'
5751 5' -52.9 NC_001806.1 + 33374 0.66 0.968182
Target:  5'- gGAGAgc-CGCGGCACcCGGAcGCGCCc -3'
miRNA:   3'- -CUCUguaGCGCUGUGuGUCU-UGCGGu -5'
5751 5' -52.9 NC_001806.1 + 135136 0.67 0.961486
Target:  5'- uGGACGUcCGCGACGaACAGGGcCGCg- -3'
miRNA:   3'- cUCUGUA-GCGCUGUgUGUCUU-GCGgu -5'
5751 5' -52.9 NC_001806.1 + 132172 0.67 0.953873
Target:  5'- -cGACG-CGCGGCugGCGuGGGCGCg- -3'
miRNA:   3'- cuCUGUaGCGCUGugUGU-CUUGCGgu -5'
5751 5' -52.9 NC_001806.1 + 43294 0.67 0.949709
Target:  5'- gGAGGCGgagcCGCGGC-UGCAGGAgGCCc -3'
miRNA:   3'- -CUCUGUa---GCGCUGuGUGUCUUgCGGu -5'
5751 5' -52.9 NC_001806.1 + 151148 0.67 0.945303
Target:  5'- --cGCGUCGC-AgGCGCAGGcGCGCCAg -3'
miRNA:   3'- cucUGUAGCGcUgUGUGUCU-UGCGGU- -5'
5751 5' -52.9 NC_001806.1 + 50674 0.67 0.945303
Target:  5'- cGGGACGaCGCGGCGgcCACGc-GCGCCAu -3'
miRNA:   3'- -CUCUGUaGCGCUGU--GUGUcuUGCGGU- -5'
5751 5' -52.9 NC_001806.1 + 31955 0.67 0.945303
Target:  5'- gGAGGgGUgGCGGgGCgggACGGGGCGCCc -3'
miRNA:   3'- -CUCUgUAgCGCUgUG---UGUCUUGCGGu -5'
5751 5' -52.9 NC_001806.1 + 115034 0.68 0.935751
Target:  5'- uGGACAaCGCGGCAgccguguaccUGCGGAACGCg- -3'
miRNA:   3'- cUCUGUaGCGCUGU----------GUGUCUUGCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.